New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4359350 =	43 (1.020)	3 (0.070)	3/246	NT	6.5%	coding (606/1446 nt)	PP_3834	hypothetical protein
	?	NC_002947	4359391 =	46 (1.140)					coding (565/1446 nt)	PP_3834	hypothetical protein

CAGCCGCGCCGTGCGCCATGTCCAATTGCGCAAGACCCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4359392‑4359350 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTG  >  NC_002947/4359391‑4359536                                                                                                                                                                                               CAGCCGCGCCGTGCGCCATGTCCAATTGCGCAAGACCCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAAC                                              <  1:3559/145‑1 CAGCCGCGCCGTGCGCCATGTCCAATTGCGCAAGACCCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAAC                                              >  2:3559/1‑145  AGCCGCGCCGTGCGCCATGTCCAATTGCGCAAGACCCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGC                                          >  8:75298/1‑148                                      CGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTC     <  2:209266/149‑1                                         GGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTG  <  1:139439/149‑1                                                                                                                                                                                               CAGCCGCGCCGTGCGCCATGTCCAATTGCGCAAGACCCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4359392‑4359350 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTG  >  NC_002947/4359391‑4359536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.