New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4359350 =	43 (1.020)	3 (0.070)	3/246	NT	6.5%	coding (606/1446 nt)	PP_3834	hypothetical protein
	?	NC_002947	4359391 =	46 (1.140)					coding (565/1446 nt)	PP_3834	hypothetical protein

TCGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGC  >  NC_002947/4359204‑4359496                                                                                                                                                   |                                                                                                                                                    caagaagttcgtctctgagctgcaggggcatgctgccttcgccggttgcaccgtactgttgctgaccagtgcccggctcgacgagggcagcccggaacacaccatggtcgatggcgtgatcgaactgggtgagcaactggtcggcaGcc                                                                                                                                                   <  1:139439‑M1/3‑1 (MQ=255)  cGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCcg                                                                                                                                                  >  3:85341/1‑149 (MQ=255)   gAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCcgc                                                                                                                                                 <  4:85341/149‑1 (MQ=255)    gaagttcgtctctgagctgcaggggcatgctgccttcgccggttgcaccgtactgttgctgaccagtgcccggctcgacgagggcagcccggaacacaccatggtcgatggcgtgatcgaactgggtgagcaactggtcggcaGCcgcg                                                                                                                                                <  2:209266‑M1/6‑1 (MQ=255)       gTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCcgcgccg                                                                                                                                             >  6:163134/1‑146 (MQ=255)          ggTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCtt                                                                                                                                          >  2:167566/1‑149 (MQ=255)             aCGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGTCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTgc                                                                                                                                        <  5:64499/148‑1 (MQ=255)                ccgcTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCaa                                                                                                                                    >  4:64705/1‑149 (MQ=255)                        gATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTgc                                                                                                                                        <  4:82002/137‑1 (MQ=255)                        gATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTgc                                                                                                                                        >  3:82002/1‑137 (MQ=255)                             gcgcCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGgcg                                                                                                                        >  8:31190/1‑148 (MQ=255)                               gcCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCAc                                                                                                                     <  3:75552/149‑1 (MQ=255)                                       gCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGc                                                                                                            >  4:126864/1‑149 (MQ=255)                                        ccACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCTGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGc                                                                                                            <  7:51435/148‑1 (MQ=255)                                         gccggttgcaccgtactgttgctgaccagtgcccggctcgacgagggcagcccggaacacaccatggtcgatggcgtgatcgaactgggtgagcaactggtcggcaGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCt                                                                                                           >  8:75298‑M1/107‑148 (MQ=255)                                             gttgcaccgtactgttgctgaccagtgcccggctcgacgagggcagcccggaacacaccatggtcgatggcgtgatcgaactgggtgagcaactggtcggcaGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTg                                                                                                          >  2:3559‑M1/103‑145 (MQ=255)                                             gttgcaccgtactgttgctgaccagtgcccggctcgacgagggcagcccggaacacaccatggtcgatggcgtgatcgaactgggtgagcaactggtcggcaGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTg                                                                                                          <  1:3559‑M1/43‑1 (MQ=255)                                                       cTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCt                                                                                             >  7:241448/1‑148 (MQ=255)                                                                   aacaacGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGAt                                                                                <  8:241448/149‑1 (MQ=255)                                                                               aGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGAc                                                                    >  8:35511/1‑149 (MQ=255)                                                                                 gCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCa                                                                  >  3:114952/1‑149 (MQ=255)                                                                                   gAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGAc                                                                    <  1:155924/145‑1 (MQ=255)                                                                                   gAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGAc                                                                    >  2:155924/1‑145 (MQ=255)                                                                                   gAGGATAGACCTGCATGCCGGACGCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATg                                                                <  4:155996/149‑1 (MQ=255)                                                                                     ggATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACACCATGGTCGATggc                                                              <  7:31190/149‑2 (MQ=255)                                                                                       aTAGACCTGCATGCCGGACTCATCGATAAGTCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGgtgt                                                            <  3:244066/149‑1 (MQ=255)                                                                                                            aTCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCTAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCtcgtc                                         >  5:102827/1‑147 (MQ=255)                                                                                                            aTCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGtt                                                                                    >  2:34888/1‑104 (MQ=255)                                                                                                            aTCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCtcgtc                                         >  5:17357/1‑147 (MQ=255)                                                                                                            aTCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCA‑CCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAg                                      >  3:195223/1‑149 (MQ=255)                                                                                                             tCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGa                                                                                 >  4:164061/1‑106 (MQ=255)                                                                                                             tCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGa                                                                                 <  3:164061/106‑1 (MQ=255)                                                                                                                aTAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCg                                   >  1:239888/1‑149 (MQ=255)                                                                                                                  aaGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCggg                                 >  6:190880/1‑149 (MQ=255)                                                                                                                   aGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCggg                                 <  2:239888/148‑1 (MQ=255)                                                                                                                    ggCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTcc                                                       >  6:28559/1‑125 (MQ=255)                                                                                                                    ggCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTcc                                                       <  5:28559/125‑1 (MQ=255)                                                                                                                       aTTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCCTCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTg                            >  6:109482/1‑149 (MQ=255)                                                                                                                       aTTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTg                            <  4:114952/149‑1 (MQ=255)                                                                                                                          cGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGt                          <  2:4756/148‑1 (MQ=255)                                                                                                                           gTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACGTGCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGt                          >  1:209266/1‑148 (MQ=255)                                                                                                                                gCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATg                                                                >  6:112277/1‑104 (MQ=255)                                                                                                                                gCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATg                                                                <  5:112277/104‑1 (MQ=255)                                                                                                                                gCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAAc                   <  6:17357/149‑1 (MQ=255)                                                                                                                                 ccccGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCTAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACa                  <  6:102827/149‑1 (MQ=255)                                                                                                                                 ccccGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACa                  <  1:87710/149‑1 (MQ=255)                                                                                                                                 ccccGACAACGCACAACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCaa                    >  3:67341/1‑147 (MQ=255)                                                                                                                                   ccGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAg                 >  4:195861/1‑148 (MQ=255)                                                                                                                                    cGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTa               >  7:21989/1‑149 (MQ=255)                                                                                                                                        aaCGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGt           <  3:126864/149‑1 (MQ=255)                                                                                                                                                acTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCgg   >  8:143427/1‑149 (MQ=255)                                                                                                                                                 cTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGc  <  6:254330/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TCGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGC  >  NC_002947/4359204‑4359496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.