New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4359350 =	43 (1.020)	3 (0.070)	3/246	NT	6.5%	coding (606/1446 nt)	PP_3834	hypothetical protein
	?	NC_002947	4359391 =	46 (1.140)					coding (565/1446 nt)	PP_3834	hypothetical protein

CACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTG  >  NC_002947/4359244‑4359536                                                                                                                                                     |                                                                                                                                                  gccggttgcaccgtactgttgctgaccagtgcccggctcgacgagggcagcccggaacacaccatggtcgatggcgtgatcgaactgggtgagcaactggtcggcaGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCt                                                                                                                                                   >  8:75298‑M1/107‑148 (MQ=255)     gttgcaccgtactgttgctgaccagtgcccggctcgacgagggcagcccggaacacaccatggtcgatggcgtgatcgaactgggtgagcaactggtcggcaGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTg                                                                                                                                                  <  1:3559‑M1/43‑1 (MQ=255)     gttgcaccgtactgttgctgaccagtgcccggctcgacgagggcagcccggaacacaccatggtcgatggcgtgatcgaactgggtgagcaactggtcggcaGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTg                                                                                                                                                  >  2:3559‑M1/103‑145 (MQ=255)               cTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCt                                                                                                                                     >  7:241448/1‑148 (MQ=255)                           aacaacGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGAt                                                                                                                        <  8:241448/149‑1 (MQ=255)                                       aGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGAc                                                                                                            >  8:35511/1‑149 (MQ=255)                                         gCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCa                                                                                                          >  3:114952/1‑149 (MQ=255)                                           gAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGAc                                                                                                            <  1:155924/145‑1 (MQ=255)                                           gAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGAc                                                                                                            >  2:155924/1‑145 (MQ=255)                                           gAGGATAGACCTGCATGCCGGACGCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATg                                                                                                        <  4:155996/149‑1 (MQ=255)                                             ggATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACACCATGGTCGATggc                                                                                                      <  7:31190/149‑2 (MQ=255)                                               aTAGACCTGCATGCCGGACTCATCGATAAGTCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGgtgt                                                                                                    <  3:244066/149‑1 (MQ=255)                                                                    aTCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCTAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCtcgtc                                                                                 >  5:102827/1‑147 (MQ=255)                                                                    aTCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGtt                                                                                                                            >  2:34888/1‑104 (MQ=255)                                                                    aTCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCtcgtc                                                                                 >  5:17357/1‑147 (MQ=255)                                                                    aTCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCA‑CCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAg                                                                              >  3:195223/1‑149 (MQ=255)                                                                     tCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGa                                                                                                                         >  4:164061/1‑106 (MQ=255)                                                                     tCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGa                                                                                                                         <  3:164061/106‑1 (MQ=255)                                                                        aTAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCg                                                                           >  1:239888/1‑149 (MQ=255)                                                                          aaGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCggg                                                                         >  6:190880/1‑149 (MQ=255)                                                                           aGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCggg                                                                         <  2:239888/148‑1 (MQ=255)                                                                            ggCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTcc                                                                                               <  5:28559/125‑1 (MQ=255)                                                                            ggCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTcc                                                                                               >  6:28559/1‑125 (MQ=255)                                                                               aTTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCCTCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTg                                                                    >  6:109482/1‑149 (MQ=255)                                                                               aTTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTg                                                                    <  4:114952/149‑1 (MQ=255)                                                                                  cGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGt                                                                  <  2:4756/148‑1 (MQ=255)                                                                                   gTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACGTGCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGt                                                                  >  1:209266/1‑148 (MQ=255)                                                                                        gCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATg                                                                                                        <  5:112277/104‑1 (MQ=255)                                                                                        gCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATg                                                                                                        >  6:112277/1‑104 (MQ=255)                                                                                        gCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAAc                                                           <  6:17357/149‑1 (MQ=255)                                                                                         ccccGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCTAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACa                                                          <  6:102827/149‑1 (MQ=255)                                                                                         ccccGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACa                                                          <  1:87710/149‑1 (MQ=255)                                                                                         ccccGACAACGCACAACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCaa                                                            >  3:67341/1‑147 (MQ=255)                                                                                           ccGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAg                                                         >  4:195861/1‑148 (MQ=255)                                                                                            cGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTa                                                       >  7:21989/1‑149 (MQ=255)                                                                                                aaCGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGt                                                   <  3:126864/149‑1 (MQ=255)                                                                                                        acTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCgg                                           >  8:143427/1‑149 (MQ=255)                                                                                                         cTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGc                                          <  6:254330/149‑1 (MQ=255)                                                                                                          cagccgcgccgtgcgccatgtccaattgcgcaagacccgcggcTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAAc                                              <  1:3559‑M2/102‑1 (MQ=255)                                                                                                          cagccgcgccgtgcgccatgtccaattgcgcaagacccgcggcTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAAc                                              >  2:3559‑M2/44‑145 (MQ=255)                                                                                                           agccgcgccgtgcgccatgtccaattgcgcaagacccgcggcTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGc                                          >  8:75298‑M2/43‑148 (MQ=255)                                                                                                                       gcgcAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGc                             <  5:21332/148‑1 (MQ=255)                                                                                                                        cgcAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGccc                           <  4:67341/149‑1 (MQ=255)                                                                                                                           aaTTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTg                        >  2:128080/1‑149 (MQ=255)                                                                                                                             ttGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTg                        >  4:130275/1‑147 (MQ=255)                                                                                                                             ttGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGc                       <  1:79285/148‑1 (MQ=255)                                                                                                                             ttGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGc                       >  2:79285/1‑148 (MQ=255)                                                                                                                             ttGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCa                      <  5:190880/149‑1 (MQ=255)                                                                                                                                   aTGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGgcag                                  <  4:230861/131‑1 (MQ=255)                                                                                                                                   aTGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGgcag                                  >  3:230861/1‑131 (MQ=255)                                                                                                                                        gcACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGAc            >  2:139439/1‑148 (MQ=255)                                                                                                                                        gcACG‑GCGCGGCTGCCGACCAGTGGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGACACg           <  6:135797/149‑1 (MQ=255)                                                                                                                                          aCG‑GCGCGGCTGCCGACCAGTTGCTCA‑CCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAAc        <  4:195223/149‑1 (MQ=255)                                                                                                                                               cgcggcTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAActtc     <  2:209266‑M2/143‑1 (MQ=255)                                                                                                                                                  ggcTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTg  <  1:139439‑M2/146‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGACAACGCACCACTGCCGCGGGTCTTGCGCAATTGGACATGGCGCACG‑GCGCGGCTGCCGACCAGTTGCTCACCCAGTTCGATCACGCCATCGACCATGGTGTGTTCCGGGCTGCCCTCGTCGAGCCGGGCACTGGTCAGCAACAGTACGGTGCAACCGGCGAAGGCAGCATGCCCCTGCAGCTCAGAGACGAACTTCTTG  >  NC_002947/4359244‑4359536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.