| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4394270 = | 40 (0.950) | 3 (0.070) | 3/246 | NT | 6.6% | coding (702/1488 nt) | PP_3869 | sheath protein |
| ? | NC_002947 | 4394363 = | 47 (1.170) | coding (609/1488 nt) | PP_3869 | sheath protein | |||||
CGCAGCAACGGCGAGTTGACTCCTGCTGGCCTCACCGTGACGGTAACCGCCATGACTGGTGGCGTCGGCACCCCGGACGTGGCCGAGGCCCTGGCCGTGCTTGGCGATGAGCCGTTCGAGTTCATCTGCGCACCTTGGGCCGATGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4394419‑4394270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaccAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGC > NC_002947/4394363‑4394509 CGCAGCAACGGCGAGTTGACTCCTGCTGGCCTCACCGTGACGGTAACCGCCATGACTGGTGGCGTCGGCACCCCGGACGTGGCCGAGGCCCTGGCCGTGCTTGGCGATGAGCCGTTCGAGTTCATCTGCGCACCTTGGGCCGATGCCAC < 3:50109/149‑1 TGGTGGCGTCGGCACCCCGGACGTGGCCGAGGCCCTGGCCGTGCTTGGCGATGAGCCGTTCGAGTTCATCTGCGCACCTTGGGCCGATGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTG > 5:113878/1‑149 GGTGGCGTCGGCACCCCGGACGTGGCCGAGGCCCTGGCCGTGCTTGGCGATGAGCCGTTCGAGTTCATCTGCGCACCTTGGGCCGATGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGC > 8:209462/1‑149 GCACCCCGGACGTGGCCGAGGCCCTGGCCGTGCTTGGCGATGAGCCGTTCGAGTTCATCTGCGCACCTTGGGCCGATGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACG < 7:209462/149‑1 CACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTC > 1:58917/1‑149 CCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGC < 5:14258/149‑1 CAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCAC > 7:228379/1‑132 CAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCAC < 8:228379/132‑1 CGCAGCAACGGCGAGTTGACTCCTGCTGGCCTCACCGTGACGGTAACCGCCATGACTGGTGGCGTCGGCACCCCGGACGTGGCCGAGGCCCTGGCCGTGCTTGGCGATGAGCCGTTCGAGTTCATCTGCGCACCTTGGGCCGATGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4394419‑4394270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaccAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGC > NC_002947/4394363‑4394509 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |