New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4394270 =	40 (0.950)	3 (0.070)	3/246	NT	6.6%	coding (702/1488 nt)	PP_3869	sheath protein
	?	NC_002947	4394363 =	47 (1.170)					coding (609/1488 nt)	PP_3869	sheath protein

TGACGTGTTGGTCGTTGCGGGTATCGCCCAAGGCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCC  >  NC_002947/4394122‑4394410                                                                                                                                                     |                                                                                                                                             tGACGTGTTGGTCGTTGCGGGTATCGCCCAAGGCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAg                                                                                                                                              <  7:246209/149‑1 (MQ=255)  gcgactgcagccacgggtgaagtggccctgacctgccgctggtccggcctcagcggcaacgacatccagctggaactgaaccgtcagggtcgcagcaacggcgagttgactcctgctggcctcaccgtgacggtaaccgccatgactgg                                                                                                                                             <  5:14258‑M1/2‑1 (MQ=255)   aCGTGTTGGTCGTTGCGGGTATCGCCCAAGGCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGt                                                                                                                                            <  2:196681/149‑1 (MQ=255)    gactgcagccacgggtgaagtggccctgacctgccgctggtccggcctcagcggcaacgacatccagctggaactgaaccgtcagggtcgcagcaacggcgagttgactcctgctggcctcaccgtgacggtaaccgccatgactggtg                                                                                                                                           >  1:58917‑M1/146‑149 (MQ=255)     gtgtTGGTCGTTGCGGGTATCGCCCAAGGCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTgg                                                                                                                                          >  3:98704/1‑149 (MQ=255)     gtgtTGGTCGTTGCGGGTATCGCCCAAGGCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTgg                                                                                                                                          >  3:104373/1‑149 (MQ=255)      tgtTGGTCGTTGCGGGTATCGCCCAAGGCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGc                                                                                                                                         <  5:115778/149‑1 (MQ=255)        ttGGTCGTTGCGGGTATCGCCCAAGGCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCAt                                                                                                                                       >  4:136560/1‑149 (MQ=255)               ttGCGGGTATCGCCCAAGGCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCa                                                                                                                                <  3:105695/149‑1 (MQ=255)                  gtgaagtggccctgacctgccgctggtccggcctcagcggcaacgacatccagctggaactgaaccgtcagggtcgcagcaacggcgagttgactcctgctggcctcaccgtgacggtaaccgccatgactg                                                                                                                                              >  7:228379‑M1/132‑132 (MQ=255)                  gtgaagtggccctgacctgccgctggtccggcctcagcggcaacgacatccagctggaactgaaccgtcagggtcgcagcaacggcgagttgactcctgctggcctcaccgtgacggtaaccgccatgactg                                                                                                                                              <  8:228379‑M1/1‑1 (MQ=255)                           cccAAGGCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGAt                                                                                                                    <  3:136560/149‑1 (MQ=255)                           cccAAGGCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGAt                                                                                                                    <  4:98704/149‑1 (MQ=255)                                 gCGACGTGTTCGCCCTGGTTTCCGCGTCAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGATGCGCTTCCAGGCATCCAGCGTGGTGGCATCGGCGCAAGGTGCGCAGATGTACt                                                                                                               <  8:57351/148‑1 (MQ=255)                                 gCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTc                                                                                                              >  3:70688/1‑149 (MQ=255)                                    aCCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAg                                                                                                                              <  7:92417/130‑1 (MQ=255)                                    aCCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAg                                                                                                                              >  8:92417/1‑130 (MQ=255)                                    aCCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGaa                                                                                                           <  4:104373/149‑1 (MQ=255)                                            gCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCAt                                                                                                   >  6:233643/1‑149 (MQ=255)                                                  cGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAATCCCTTCCAGGCATCCAGCTAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCaa                                                                                             <  3:22271/149‑1 (MQ=255)                                                       cgcgACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACg                                                                                        <  1:138660/149‑1 (MQ=255)                                                              aGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATTGCCAAGCACGGCCAggg                                                                                 >  5:188165/1‑149 (MQ=255)                                                               gCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGc                                                                                <  4:70688/149‑1 (MQ=255)                                                                   aaTAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCg                                                                            <  8:230923/149‑1 (MQ=255)                                                                          gTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTg                                                                                                                           <  4:162806/95‑1 (MQ=255)                                                                          gTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTg                                                                                                                           >  3:162806/1‑95 (MQ=255)                                                                                aTACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCgggg                                                               >  7:225200/1‑149 (MQ=255)                                                                                   cgtcagggtcgcagcaacggcgagttgactcctgctggcctcaccgtgacggtaaccgccatgactGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGc                                                            <  7:209462‑M1/83‑1 (MQ=255)                                                                                   cAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGc                                                            >  6:216777/1‑149 (MQ=255)                                                                                      cTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGa                                                         >  3:81802/1‑149 (MQ=255)                                                                                             gcagcaacggcgagttgactcctgctggcctcaccgtgacggtaaccgccatgactGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGccacc                                                  >  8:209462‑M1/57‑149 (MQ=255)                                                                                              cccAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCgg                                                                 >  2:57874/1‑133 (MQ=255)                                                                                              cccAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCgg                                                                 <  1:57874/133‑1 (MQ=255)                                                                                              cagcaacggcgagttgactcctgctggcctcaccgtgacggtaaccgccatgactGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGccacca                                                 >  5:113878‑M1/56‑149 (MQ=255)                                                                                               ccAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAg                                                >  6:14258/1‑149 (MQ=255)                                                                                                 gacaccAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGt                                               >  5:11076/5‑148 (MQ=255)                                                                                                         cGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGt                                      <  8:225200/149‑1 (MQ=255)                                                                                                                  gtgtCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCAc                             <  5:233643/149‑1 (MQ=255)                                                                                                                   tgtCGTCCATGAAGCCCTTCCAGTCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATTGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACg                            <  6:188165/149‑1 (MQ=255)                                                                                                                           aTGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCggg                                                                <  7:112430/105‑1 (MQ=255)                                                                                                                           aTGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCggg                                                                >  8:112430/1‑105 (MQ=255)                                                                                                                             gAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCcag                  >  8:83630/1‑149 (MQ=255)                                                                                                                               aGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCcag                  >  7:42818/1‑147 (MQ=255)                                                                                                                                  ccTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGa             <  6:202924/149‑1 (MQ=255)                                                                                                                                          gCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCCCCAGTCAGGGCGGTTACCGGAAGGGTCAGGCCAGCAGGAGACaaaac     >  1:268720/1‑146 (MQ=255)                                                                                                                                            aTCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCcagcag               <  6:58313/137‑1 (MQ=255)                                                                                                                                            aTCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCcagcag               >  5:58313/1‑137 (MQ=255)                                                                                                                                            aTCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGc   >  2:67520/1‑149 (MQ=255)                                                                                                                                             tCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGcc  >  8:244754/1‑149 (MQ=255)                                                                                                                                              ccAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCcagcag               >  2:54986/1‑135 (MQ=255)                                                                                                                                              ccAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCcagcag               <  1:54986/135‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             TGACGTGTTGGTCGTTGCGGGTATCGCCCAAGGCGACCAGTTCGCCCAGCGTACCGCGACAAGCCGAATAGACGTGGCCATACAGCTGACGCGCCCAGCTCCAGCGGCCGCTGGTGTCGTCCATGAAGCCCTTCCAGGCATCCAGCGAGGTGGCATCGGCCCAAGGTGCGCAGATGAACTCGAACGGCTCATCGCCAAGCACGGCCAGGGCCTCGGCCACGTCCGGGGTGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCC  >  NC_002947/4394122‑4394410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.