New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4455885 =	30 (0.710)	4 (0.100)	4/252	NT	10.3%	coding (1100/2178 nt)	PP_3950	methyl‑accepting chemotaxis transducer
	?	NC_002947	4455936 =	40 (0.970)					coding (1049/2178 nt)	PP_3950	methyl‑accepting chemotaxis transducer

GCCCGACCGCTGGGGCATGATGTGCGAGGCGGACCTGGAGGAGGTCTACCGCCGGCGTTCGCTGAGCTACGGGTTGATGAAACCCTATGTGGCGATCATGGCGGGGCTGTTCGGCTGCAATTACCTGGTGCAGCACTATGCAGGCCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4456034‑4455885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAGGTAACGCCCTTGCCCACCACTGGCACATGA  >  NC_002947/4455936‑4456082                                                                                                                                                                                                                                                                                                           GCCCGACCGCTGGGGCATGATGTGCGAGGCGGACCTGGAGGAGGTCTACCGCCGGCGTTCGCTGAGCTACGGGTTGATGAAACCCTATGTGGCGATCATGGCGGGGCTGTTCGGCTGCAATTACCTGGTGCAGCACTATGCAGGCCTGC                                                                                                                                                      >  8:205034/1‑149  CCCGACCGCTGGGGCATGATGTGCGAGGCGGACCTGGAGGAGGTCTACCGCCGGCGTTCGCTGAGCTACGGGTTGATGAAACCCTATGTGGCGATCATGGCGGGGCTGTTCGGCTGCAATTACCTGGTGCAGCACTATGCAGGCCTGCC                                                                                                                                                     <  8:23001/149‑1                                                                                                    GGCGGGGCTGTTCGGCTGCAATTACCTGGTGCAGCACTATGCAGGCCTGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGG                                                   >  4:184201/1‑149                                                                                                             GTTCGGCTGCAATTACCTGGTGCAGCACTATGCAGGCCTGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGG                                                   >  7:66105/1‑140                                                                                                             GTTCGGCTGCAATTACCTGGTGCAGCACTATGCAGGCCTGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGG                                                   <  8:66105/140‑1                                                                                                                      CAATTACCTGGTGCAGCACTATGCAGGCCTGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAA                                 <  3:184201/149‑1                                                                                                                                                     CCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAGGTAACGCCCTTGCCCACCACTGGCACATGA  <  1:189236/149‑1                                                                                                                                                                                                                                                                                                           GCCCGACCGCTGGGGCATGATGTGCGAGGCGGACCTGGAGGAGGTCTACCGCCGGCGTTCGCTGAGCTACGGGTTGATGAAACCCTATGTGGCGATCATGGCGGGGCTGTTCGGCTGCAATTACCTGGTGCAGCACTATGCAGGCCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4456034‑4455885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAGGTAACGCCCTTGCCCACCACTGGCACATGA  >  NC_002947/4455936‑4456082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.