New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4455885 =	30 (0.710)	4 (0.100)	4/252	NT	10.3%	coding (1100/2178 nt)	PP_3950	methyl‑accepting chemotaxis transducer
	?	NC_002947	4455936 =	40 (0.970)					coding (1049/2178 nt)	PP_3950	methyl‑accepting chemotaxis transducer

CGCAGGTTGCCTTCACCCTCGGCGATGGTGCATAGCACACTGCTCATACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGG  >  NC_002947/4455738‑4456033                                                                                                                                                    |                                                                                                                                                     tcatgtgccagtggtgggcaagggcgttaccttccagttgccgggctcgcccgaccgctggggcatgatgtgcgaggcggacctggaggaggtctaccgccggcgttcgctgagctacgggttgatgaaaccctatgtggcgatcatgg                                                                                                                                                     <  1:189236‑M1/2‑1 (MQ=255)  gcAGGTTGCCTTCACCCTCGGCGATGGTGCATAGCACACTGCTCATACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCgg                                                                                                                                                     >  5:145993/1‑148 (MQ=255)    aGGTTGCCTTCACCCTCGGCGATGGTGCATAGCACACTGCTCATACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAg                                                                                                                                                  <  2:163767/149‑1 (MQ=255)    aGGTTGCCTTCACCCTCGGCGATGGTGCATAGCACACTGCTCATACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAg                                                                                                                                                  <  2:159775/149‑1 (MQ=255)         gCCTTCACCCTCGGCGATGGTGCATAGCACACTGCTCATACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCt                                                                                                                                              <  6:224928/148‑1 (MQ=255)          ccTTCACCCTCGGCGATGGTGCATAGCACACTGCTCATACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTg                                                                                                                                             <  7:251024/148‑1 (MQ=255)           cTTCACCCTCGGCGATGGTGCATAGCACACTGCTCATACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCa                                                                                                                                           >  3:118529/1‑149 (MQ=255)                                ttccagttgccgggctcgcccgaccgctggggcatgatgtgcgaggcggacctggaggaggtctaccgccggcgttcgctgagctacgggttgatgaaaccctatgtggcgatcatGGCAGGCCTGCATAGTGCTGCACCAGGTAATTg                                                                                                                      <  3:184201‑M1/33‑1 (MQ=255)                                   gCACACTGCTCATACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCa                                                                                                                    <  7:91717/148‑1 (MQ=255)                                              aTACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAg                                                                                                                             <  2:235428/128‑1 (MQ=255)                                              aTACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAg                                                                                                                             >  1:235428/1‑128 (MQ=255)                                              aTACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGccc                                                                                                        >  1:260631/1‑149 (MQ=255)                                                  cccgaccgctggggcatgatgtgcgaggcggacctggaggaggtctaccgccggcgttcgctgagctacgggttgatgaaaccctatgtggcgatcatGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAAc                                                                                                             <  8:66105‑M1/42‑1 (MQ=255)                                                  cccgaccgctggggcatgatgtgcgaggcggacctggaggaggtctaccgccggcgttcgctgagctacgggttgatgaaaccctatgtggcgatcatGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAAc                                                                                                             >  7:66105‑M1/99‑140 (MQ=255)                                                  cccgaccgctggggcatgatgtgcgaggcggacctggaggaggtctaccgccggcgttcgctgagctacgggttgatgaaaccctatgtggcgatcatGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGcc                                                                                                    >  4:184201‑M1/99‑149 (MQ=255)                                                        aCCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCa                                                                                                                                           >  8:115856/1‑104 (MQ=255)                                                        aCCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCa                                                                                                                                           <  7:115856/104‑1 (MQ=255)                                                                        cgtGGGCCCGAGCACGCCAAACACCAAGCTGGCGCCCAGCATGCTCAAGGCCTCGCTCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTtca                                                                              <  8:125945/147‑1 (MQ=255)                                                                              cccGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAAc                                                                         <  1:29915/148‑1 (MQ=255)                                                                              cccGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAAc                                                                         >  2:29915/1‑148 (MQ=255)                                                                                  aGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTa                                                                    <  8:36924/149‑1 (MQ=255)                                                                                       gCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCt                                                                 >  4:219957/1‑147 (MQ=255)                                                                                         cAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGc                                                             >  8:93864/1‑149 (MQ=255)                                                                                         cAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGc                                                             >  2:58163/1‑149 (MQ=255)                                                                                          aaaCAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGc                                                             >  8:24221/1‑148 (MQ=255)                                                                                             caacaaGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAAc                                                         >  7:38216/1‑149 (MQ=255)                                                                                             caacaaGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAAc                                                         <  3:244575/149‑1 (MQ=255)                                                                                              aacaaGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGa                                                                                                >  6:37419/1‑109 (MQ=255)                                                                                              aacaaGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGa                                                                                                <  5:37419/109‑1 (MQ=255)                                                                                                       gcgcCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCATCCCGTAGCTCAGCGAACGCCGGCGGTa                                               <  2:260631/149‑1 (MQ=255)                                                                                                            cAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGAcct                                          >  7:30237/1‑149 (MQ=255)                                                                                                                aTGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACctcctc                                      <  6:145993/149‑1 (MQ=255)                                                                                                                      aaGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCACGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTc                                >  7:205034/1‑149 (MQ=255)                                                                                                                         gCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGc                             >  1:131719/1‑149 (MQ=255)                                                                                                                           cTCGATAACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCAGGCGGTAGACCTCCTCCAGGTACGCCt                           >  6:135504/1‑149 (MQ=255)                                                                                                                            tCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTc                          >  7:94226/1‑149 (MQ=255)                                                                                                                               aTCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGca                       <  3:219957/149‑1 (MQ=255)                                                                                                                                  aCGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGcaca                     <  7:24221/148‑1 (MQ=255)                                                                                                                                                ttGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGt      >  5:167945/1‑149 (MQ=255)                                                                                                                                                  gCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCg    >  5:201123/1‑149 (MQ=255)                                                                                                                                                    GGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCggg  <  8:23001‑M1/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGCAGGTTGCCTTCACCCTCGGCGATGGTGCATAGCACACTGCTCATACCATTCAACCTCGCGGCCAGGCGCTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGG  >  NC_002947/4455738‑4456033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.