New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4455885 =	30 (0.710)	4 (0.100)	4/252	NT	10.3%	coding (1100/2178 nt)	PP_3950	methyl‑accepting chemotaxis transducer
	?	NC_002947	4455936 =	40 (0.970)					coding (1049/2178 nt)	PP_3950	methyl‑accepting chemotaxis transducer

CTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAGGTAACGCCCTTGCCCACCACTGGCACATGACG  >  NC_002947/4455809‑4456084                                                                                                                                |                                                                                                                                                     cgtGGGCCCGAGCACGCCAAACACCAAGCTGGCGCCCAGCATGCTCAAGGCCTCGCTCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTtca                                                                                                                                 <  8:125945/147‑1 (MQ=255)       cccGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAAc                                                                                                                            <  1:29915/148‑1 (MQ=255)       cccGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAAc                                                                                                                            >  2:29915/1‑148 (MQ=255)           aGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTa                                                                                                                       <  8:36924/149‑1 (MQ=255)                gCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCt                                                                                                                    >  4:219957/1‑147 (MQ=255)                  cAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGc                                                                                                                >  8:93864/1‑149 (MQ=255)                  cAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGc                                                                                                                >  2:58163/1‑149 (MQ=255)                   aaaCAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGc                                                                                                                >  8:24221/1‑148 (MQ=255)                      caacaaGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAAc                                                                                                            >  7:38216/1‑149 (MQ=255)                      caacaaGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAAc                                                                                                            <  3:244575/149‑1 (MQ=255)                       aacaaGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGa                                                                                                                                                   >  6:37419/1‑109 (MQ=255)                       aacaaGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGa                                                                                                                                                   <  5:37419/109‑1 (MQ=255)                                gcgcCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCATCCCGTAGCTCAGCGAACGCCGGCGGTa                                                                                                  <  2:260631/149‑1 (MQ=255)                                     cAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGAcct                                                                                             >  7:30237/1‑149 (MQ=255)                                         aTGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACctcctc                                                                                         <  6:145993/149‑1 (MQ=255)                                               aaGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCACGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTc                                                                                   >  7:205034/1‑149 (MQ=255)                                                  gCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGc                                                                                >  1:131719/1‑149 (MQ=255)                                                    cTCGATAACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCAGGCGGTAGACCTCCTCCAGGTACGCCt                                                                              >  6:135504/1‑149 (MQ=255)                                                     tCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTc                                                                             >  7:94226/1‑149 (MQ=255)                                                        aTCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGca                                                                          <  3:219957/149‑1 (MQ=255)                                                           aCGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGcaca                                                                        <  7:24221/148‑1 (MQ=255)                                                                         ttGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGt                                                         >  5:167945/1‑149 (MQ=255)                                                                           gCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCg                                                       >  5:201123/1‑149 (MQ=255)                                                                             ggcggggctgttcggctgcaattacctggtgcagcactatgcaggcctgccATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCggg                                                     >  4:184201‑M2/52‑149 (MQ=255)                                                                             GGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCggg                                                     <  8:23001‑M1/149‑1 (MQ=255)                                                                              GCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGc                                                    >  8:205034‑M1/1‑149 (MQ=255)                                                                                aGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGa                                                  <  7:5458/149‑1 (MQ=255)                                                                                  gCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTtc                                                                                                                                  <  8:70983/67‑1 (MQ=255)                                                                                  gCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTtc                                                                                                                                  >  7:70983/1‑67 (MQ=255)                                                                                     tGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATTATGCCCCAGCGGTCGGGCGAGCCCg                                             <  8:38216/149‑1 (MQ=255)                                                                                      gttcggctgcaattacctggtgcagcactatgcaggcctgccATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCggg                                                     >  7:66105‑M2/43‑140 (MQ=255)                                                                                      gttcggctgcaattacctggtgcagcactatgcaggcctgccATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCggg                                                     <  8:66105‑M2/98‑1 (MQ=255)                                                                                       cATAGTGCTGCCCCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCg                                             <  8:94226/147‑1 (MQ=255)                                                                                       cATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCg                                             <  4:118529/147‑1 (MQ=255)                                                                                       cATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGc                                           <  7:93864/149‑1 (MQ=255)                                                                                           gTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAAc                                        <  5:135504/148‑1 (MQ=255)                                                                                           gTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACt                                       <  2:131719/149‑1 (MQ=255)                                                                                             gctgcACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGAcctc                                                                                            >  3:63396/1‑94 (MQ=255)                                                                                             gctgcACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGAcctc                                                                                            <  4:63396/94‑1 (MQ=255)                                                                                               caattacctggtgcagcactatgcaggcctgccATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGaa                                   <  3:184201‑M2/116‑1 (MQ=255)                                                                                                 cACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAgg                                 <  6:167945/149‑1 (MQ=255)                                                                                                    cAGGTAATTGCAGCCGAACAGCCCCGCCATGAACGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAGGTaa                              >  2:245892/1‑149 (MQ=255)                                                                                                      ggTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGGCGGGCGAGCCCGGCAACTGGAAGGTAACg                            <  1:58163/149‑1 (MQ=255)                                                                                                       gTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGCACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAGGTAACGc                           >  4:29857/1‑149 (MQ=255)                                                                                                       gTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAGGTAACGc                           >  4:90647/1‑149 (MQ=255)                                                                                                                 ccGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAGGTAACGCCCTTGCccac                 >  2:189236/1‑149 (MQ=255)                                                                                                                    aaCAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGc                                                                           <  5:139220/88‑1 (MQ=255)                                                                                                                    aaCAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGc                                                                           >  6:139220/1‑88 (MQ=255)                                                                                                                          cccGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCa                                          <  5:155850/115‑1 (MQ=255)                                                                                                                          cccGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCa                                          >  6:155850/1‑115 (MQ=255)                                                                                                                              ccATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAGGTAACGCCCTTGCCCACCACTGGCACATGa    <  1:189236‑M2/147‑1 (MQ=255)                                                                                                                                aTGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAGGTAACGCCCTTGCCCACCACTGGCACATGACg  <  6:201123/149‑1 (MQ=255)                                                                                                                                |                                                                                                                                                     CTTGGGCCCGAGCACGCCAAACAACAAGGTGGCGCCCAGCATGCTCAAGGCCTCGATCACGTCAGTCAGTCCTTGCGGCAGGCCTGCATAGTGCTGCACCAGGTAATTGCAGCCGAACAGCCCCGCCATGATCGCCACATAGGGTTTCATCAACCCGTAGCTCAGCGAACGCCGGCGGTAGACCTCCTCCAGGTCCGCCTCGCACATCATGCCCCAGCGGTCGGGCGAGCCCGGCAACTGGAAGGTAACGCCCTTGCCCACCACTGGCACATGACG  >  NC_002947/4455809‑4456084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.