| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4542437 = | 36 (0.850) | 5 (0.120) | 4/248 | NT | 11.2% | coding (1154/1503 nt) | nhaB | Na(+)/H(+) antiporter NhaB |
| ? | NC_002947 | 4542503 = | 45 (1.110) | coding (1220/1503 nt) | nhaB | Na(+)/H(+) antiporter NhaB | |||||
TTTCGAAATGCTCGCGGCTCATGCTGCCATCGAGAAATGCCTGCTTCACTTCAGTGATGTAGATGGTGGCAACGAACACATTGTCGCTGATCGCCGACAGCAAGCCGTTGGCCAGGTACAGCATGCCCGGTTGCTGTTCGGCCGGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4542586‑4542437‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCCGCGAGCATTTCGAAACCCTGGCGGTGGCGATCAACACCGGCACCAACCTGCCAAGCGTGGCGACGCCGAACGGGCAGGC > NC_002947/4542503‑4542650 TTTCGAAATGCTCGCGGCTCATGCTGCCATCGAGAAATGCCTGCTTCACTTCAGTGATGTAGATGGTGGCAACGAACACATTGTCGCTGATCGCCGACAGCAAGCCGTTGGCCAGGTACAGCATGCCCGGTTGCTGTTCGGCCGGCAGC > 3:197801/1‑149 AACGAACACATTGTCGCTGATCGCCGACAGCAAGCCGTTGGCCAGGTACAGCATGCCCGGTTGCTGTTCGGCCGGCAGCGCCAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCC > 4:84375/1‑149 AACGAACACATTGTCGCTGATCGCCGACAGCAAGCCGTTGGCCAGGTACAGCATGCCCGGTTGCTGTTCGGCCGGCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGA < 3:185590/135‑1 AACGAACACATTGTCGCTGATCGCCGACAGCAAGCCGTTGGCCAGGTACAGCATGCCCGGTTGCTGTTCGGCCGGCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGA > 4:185590/1‑135 TCGCTGATCGCCGACAGCAAGCCGTTGGCCAGGTACAGCATGCCCGGTTGCTGTTCGGCCGGCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGTTGGCAGCATGAGCCGCGAGCATTTC < 2:175899/147‑1 TCGCTGATCGCCGACAGCAAGCCGTTGGCCAGGTACAGCATGCCCGGTTGCTGTTCGGCCGGCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCCGCGAGCATTTC > 1:175899/1‑147 CGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCCGCGAGCATTTCGATACCCTGGCGGTGGCGATCAACACCGGCACCAACCTGCCAAGCGTGGC < 1:194690/132‑1 CGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCCGCGAGCATTTCGAAACCCTGGCGGTGGCGATCAACACCGGCACCAACCTGCCAAGCGTGGC > 2:194690/1‑132 GACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCCGCGAGCATTTCGAAACCCTGGCGGTGGCGATCAACACCGGCACCAACCTGCCAAGCGTGGCGACGCCGAACGGGCAGGC > 5:253229/1‑149 TTTCGAAATGCTCGCGGCTCATGCTGCCATCGAGAAATGCCTGCTTCACTTCAGTGATGTAGATGGTGGCAACGAACACATTGTCGCTGATCGCCGACAGCAAGCCGTTGGCCAGGTACAGCATGCCCGGTTGCTGTTCGGCCGGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4542586‑4542437‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCCGCGAGCATTTCGAAACCCTGGCGGTGGCGATCAACACCGGCACCAACCTGCCAAGCGTGGCGACGCCGAACGGGCAGGC > NC_002947/4542503‑4542650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |