New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4542437 =	36 (0.850)	5 (0.120)	4/248	NT	11.2%	coding (1154/1503 nt)	nhaB	Na(+)/H(+) antiporter NhaB
	?	NC_002947	4542503 =	45 (1.110)					coding (1220/1503 nt)	nhaB	Na(+)/H(+) antiporter NhaB

GCCTTCACCGGCATCACCGACGAGCACCGCCTCGGCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCCGCGAGCATTTCG  >  NC_002947/4542289‑4542583                                                                                                                                                     |                                                                                                                                                   gcctgcccgttcggcgtcgccacgcttggcaggttggtgccggtgttgatcgccaccgccagggtttcgaaatgctcgcggctcatgctgccatcgagaaatgcctgcttcacttcagtgatgtagatggtggcaacgaacacattgtc                                                                                                                                                    >  5:253229‑M1/149‑149 (MQ=255)        ccGGCACCACCGACGAGCACCGCCTCGGCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTgccg                                                                                                                                             <  4:73346/149‑1 (MQ=255)              tCACCGACGAGCACCGCCTCGGCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGaa                                                                                                                                       <  2:31781/149‑1 (MQ=255)                   gccacgcttggcaggttggtgccggtgttgatcgccaccgccagggtttcgaaatgctcgcggctcatgctgccatcgagaaatgcctgcttcacttcagtgatgtagatggtggcaacgaacacattgtCg                                                                                                                                                   >  2:194690‑M1/131‑132 (MQ=255)                   gccacgcttggcaggttggtgccggtgttgatcgccaccgccagggtatcgaaatgctcgcggctcatgctgccatcgagaaatgcctgcttcacttcagtgatgtagatggtggcaacgaacacattgtCg                                                                                                                                                   <  1:194690‑M1/2‑1 (MQ=255)                    acgaGCACCGCCTCGGCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCaa                                                                                                                                 >  1:147706/1‑149 (MQ=255)                          aCCGCCTCGGCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGc                                                                                                                           <  1:108760/149‑1 (MQ=255)                          aCCGCCTCGGCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGc                                                                                                                           <  5:198730/149‑1 (MQ=255)                            cGCCTCGGCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGATGGTGGTGTTCTTCGCCGTGGTCGCGGTGAGTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAGCCGGGCAt                                                                                                                         >  6:106039/1‑149 (MQ=255)                              ccTCGGCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAAc                                                                                                                                      >  1:270879/1‑134 (MQ=255)                              ccTCGGCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAAc                                                                                                                                      <  2:270879/134‑1 (MQ=255)                               cTCGGCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCt                                                                                                                      <  4:145645/149‑1 (MQ=255)                                   gCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTAc                                                                                                                  <  5:271512/149‑1 (MQ=255)                                        gCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGc                                                                                                             <  7:215860/149‑1 (MQ=255)                                         ccTTCCAGGACGCCATGGCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGcc                                                                                                            <  4:179987/149‑1 (MQ=255)                                           ttCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCaa                                                                                                          >  3:75322/1‑149 (MQ=255)                                                 gACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCtt                                                                                                    >  7:232399/1‑149 (MQ=255)                                                    gCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCt                                                                                                 <  5:179127/149‑1 (MQ=255)                                                                     gaaatgctcgcggctcatgctgccatcgagaaatgcctgcttcacttcagtgatgtagatggtggcaacgaacacattgtCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGa                                                                                  >  1:175899‑M1/81‑147 (MQ=255)                                                                     gaaatgctcgcggctcatgctgccaacgagaaatgcctgcttcacttcagtgatgtagatggtggcaacgaacacattgtCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGa                                                                                  <  2:175899‑M1/67‑1 (MQ=255)                                                                      cTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACaa                                                                               <  4:75322/149‑1 (MQ=255)                                                                        gTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAAtg                                                                             >  6:171512/1‑149 (MQ=255)                                                                             tggtgTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTc                                                                        <  7:52351/149‑1 (MQ=255)                                                                             tggtgTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTc                                                                        >  4:83270/1‑149 (MQ=255)                                                                                ggctcatgctgccatcgagaaatgcctgcttcacttcagtgatgtagatggtggcaacgaacacattggCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGtt                                                                     >  4:84375‑M1/70‑149 (MQ=255)                                                                                              tcgagaaatgcctgcttcacttcagtgatgtagatggtggcaacgaacacattgtCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGtt                                                                     >  4:185590‑M1/56‑135 (MQ=255)                                                                                              tcgagaaatgcctgcttcacttcagtgatgtagatggtggcaacgaacacattgtCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGtt                                                                     <  3:185590‑M1/80‑1 (MQ=255)                                                                                                 gcgGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCAc                                                    >  4:95059/1‑149 (MQ=255)                                                                                                  cgGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACt                                                   <  5:225052/149‑1 (MQ=255)                                                                                                  cgGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACt                                                   <  5:228707/149‑1 (MQ=255)                                                                                                  cgGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACt                                                   >  5:271192/1‑149 (MQ=255)                                                                                                    gTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACtga                                                 <  2:147706/149‑1 (MQ=255)                                                                                                           atcaGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACtgaagtgaag                                          >  5:227218/1‑149 (MQ=255)                                                                                                           atcaGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACtgaagtgaag                                          >  8:10113/1‑149 (MQ=255)                                                                                                            tcaGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGc                                         <  8:232399/149‑1 (MQ=255)                                                                                                                      cTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTtct                               >  2:215481/1‑149 (MQ=255)                                                                                                                      cTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTtct                               >  5:266840/1‑149 (MQ=255)                                                                                                                         ttCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGa                            <  7:10113/149‑1 (MQ=255)                                                                                                                              cccATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATgg                         >  4:197801/1‑147 (MQ=255)                                                                                                                                cATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATgtgt                                                                          >  5:5417/1‑96 (MQ=255)                                                                                                                                cATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATgtgt                                                                          <  6:5417/96‑1 (MQ=255)                                                                                                                                 aTTGATAAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGgcagca                    >  6:198443/1‑149 (MQ=255)                                                                                                                                        aaCTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCcg             >  2:52460/1‑149 (MQ=255)                                                                                                                                         aCTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCcgc            >  1:78565/1‑149 (MQ=255)                                                                                                                                                    gcgcTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCCGCGAGCATTTCg  <  3:83270/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GCCTTCACCGGCATCACCGACGAGCACCGCCTCGGCCGTGCCTTCCAGGACGCCATGCCGTTCACTTCGCTGTTGGTGGTGTTCTTCGCCGTGGTCGCGGTGATTCATCAGCAGCAGCTGTTCAGCCCATTGATCAACTGGGTGCTGGCGCTGCCGGCCGAACAGCAACCGGGCATGCTGTACCTGGCCAACGGCTTGCTGTCGGCGATCAGCGACAATGTGTTCGTTGCCACCATCTACATCACTGAAGTGAAGCAGGCATTTCTCGATGGCAGCATGAGCCGCGAGCATTTCG  >  NC_002947/4542289‑4542583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.