| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4688101 = | 26 (0.620) | 5 (0.130) | 5/242 | NT | 14.2% | coding (2/1020 nt) | PP_4149 | ABC transporter permease |
| ? | NC_002947 | 4688149 = | 36 (0.910) | coding (50/1020 nt) | PP_4149 | ABC transporter permease | |||||
CGTCGTAACGTACGGCGATCGGTTTGTCGTTGGCGATCAGTTCGGCGCCCAGGCTCAGCCCGAACAGAATCAGGAACAGCCACAGCGACCACCAGCCACGGCGGTTGGCCTTGAAACGCTCGAAGCGCCGGCGGTTGAGGGGGGACAAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4688253‑4688101‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccaACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGCGTTCAAGCGTTACCCGGAAACCA > NC_002947/4688149‑4688295 CGTCGTAACGTACGGCGATCGGTTTGTCGTTGGCGATCAGTTCGGCGCCCAGGCTCAGCCCGAACAGAATCAGGAACAGCCACAGCGACCACCAGCCACGGCGGTTGGCCTTGAAACGCTCGAAGCGCCGGCGGTTGAGGGGGGACAAG > 6:20368/1‑149 GTAACGTACGGCGATCGGTTTGTCGTTGGCGATCAGTTCGGCGCCCAGGCTCAGCCCGAACAGAATCAGGAACAGCCACAGCGACCACCAGCCACGGCGGTTGGCCTTGAAACGCTCGAAGCGCCGGCGGTTGAGGGGGGACAAGGCCA < 1:160175/149‑1 CGGTTGGCCTTGAAACGCTCGAAGCGCCGGCGGTTGAGGGGGGACAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACG > 1:3252/1‑149 CCTTGAAACGCTCGAAGCGCCGGCGGTTGAGGGGGGACAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGG > 1:162993/1‑92 CCTTGAAACGCTCGAAGCGCCGGCGGTTGAGGGGGGACAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGG < 2:162993/92‑1 AAACGCTCGAAGCGCCGGCGGTTGAGGGGGGACAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAAC < 5:13260/124‑1 AAACGCTCGAAGCGCCGGCGGTTGAGGGGGGACAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAAC > 6:13260/1‑124 CAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGCGTT > 2:188130/1‑135 CAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGCGTTCAAGCGTTACCCGGAAACCA > 4:216285/1‑149 CGTCGTAACGTACGGCGATCGGTTTGTCGTTGGCGATCAGTTCGGCGCCCAGGCTCAGCCCGAACAGAATCAGGAACAGCCACAGCGACCACCAGCCACGGCGGTTGGCCTTGAAACGCTCGAAGCGCCGGCGGTTGAGGGGGGACAAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4688253‑4688101‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccaACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGCGTTCAAGCGTTACCCGGAAACCA > NC_002947/4688149‑4688295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |