New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4688101 =	26 (0.620)	5 (0.130)	5/242	NT	14.2%	coding (2/1020 nt)	PP_4149	ABC transporter permease
	?	NC_002947	4688149 =	36 (0.910)					coding (50/1020 nt)	PP_4149	ABC transporter permease

ATCTTCACCCTGCTAGGGCTGGTGGTGAAACTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGCGTTCAAGCGTTACCCGGAAACCA  >  NC_002947/4688003‑4688295                                                                                                                                                   |                                                                                                                                                   aTCTTCACCCTGCTAGGGCTGGTGGTGAAACTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAAcc                                                                                                                                                  >  3:37358/1‑149 (MQ=255)  cgtacggcgatcggtttgtcgttggcgatcagttcggcgcccaggctcagcccgaacagaatcaggaacagccacagcgaccaccagccacggcggtTGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAAccg                                                                                                                                                 >  1:3252‑M1/98‑149 (MQ=255)                gggCTGGTGGTGAAACTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCGAGCGGGGAGCACTGACATGGCGTTGTCCCCCCTGAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCtggtg                                                                                                                                     <  3:114984/147‑1 (MQ=255)                gggCTGGTGGTGAAACTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGGTTCAAGGCCAACCGCCGTGGCtggtg                                                                                                                                     <  7:81492/147‑1 (MQ=255)                               cTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTcc                                                                                                                    <  8:70100/149‑1 (MQ=255)                                tGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCt                                                                                                                   >  2:261350/1‑149 (MQ=255)                                     ggCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTcc                                                                                                                    >  5:257294/1‑143 (MQ=255)                                             gacctACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCggg                                                                                                      >  2:31786/1‑149 (MQ=255)                                              acctACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCggg                                                                                                      <  3:55387/148‑1 (MQ=255)                                                 tACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCtggtg                                                                                                                                     >  3:112908/1‑114 (MQ=255)                                                 tACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCtggtg                                                                                                                                     <  4:112908/114‑1 (MQ=255)                                                  acacCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAg                                                                                                 >  3:76027/1‑149 (MQ=255)                                                       ttGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCTGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTc                                                                                                                     <  7:22072/124‑1 (MQ=255)                                                       ttGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCTGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTc                                                                                                                     >  8:22072/1‑124 (MQ=255)                                                       aaagTCGATGCGCGGATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTgg                                                                                            >  2:176671/4‑149 (MQ=255)                                                           tCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGgcgc                                                                                        <  1:31786/149‑1 (MQ=255)                                                               tgcgcgGATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGaa                                                                                    <  1:176671/147‑1 (MQ=255)                                                               tCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGaa                                                                                    >  2:59259/1‑149 (MQ=255)                                                                      aTCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCg                                                                             >  5:235708/1‑149 (MQ=255)                                                                           cTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAAc                                                                        >  6:1198/1‑149 (MQ=255)                                                                                  aGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAAc                                                                 >  5:20368/1‑149 (MQ=255)                                                                                  aGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAAc                                                                 <  1:261350/149‑1 (MQ=255)                                                                                      gggAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGAt                                                             <  5:1198/149‑1 (MQ=255)                                                                                              tGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTAc                                                     >  1:154766/1‑149 (MQ=255)                                                                                               cggttggccttgaaacgctcgaagcgccggcggttgaggggggacaaggccaACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACg                                                    >  1:3252‑M2/53‑149 (MQ=255)                                                                                                aCATGGCCTTGTCCCCCCTCACCCGCCGGCGCTTCGTGCGTTTGAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCTAc                                                                        <  3:184649/128‑1 (MQ=255)                                                                                                aCATCGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTCGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCTCCGAACAGATCTCCAAc                                                                        >  4:184649/1‑128 (MQ=255)                                                                                                   TGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTac                                                <  1:160175‑M1/149‑1 (MQ=255)                                                                                                      ccttgaaacgctcgaagcgccggcggttgaggggggacaaggccaACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCggg                                                                                                      >  1:162993‑M2/46‑92 (MQ=255)                                                                                                      ccttgaaacgctcgaagcgccggcggttgaggggggacaaggccaACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCggg                                                                                                      <  2:162993‑M2/47‑1 (MQ=255)                                                                                                       CTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTacgacg                                            >  6:20368‑M1/1‑149 (MQ=255)                                                                                                           aaacgctcgaagcgccggcggttgaggggggacaaggccaACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAAc                                                                 <  5:13260‑M2/84‑1 (MQ=255)                                                                                                           aaacgctcgaagcgccggcggttgaggggggacaaggccaACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAAc                                                                 >  6:13260‑M2/41‑124 (MQ=255)                                                                                                             cccccTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAAt                                      >  7:32326/1‑149 (MQ=255)                                                                                                              ccccTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAAc                                                                 >  8:129320/1‑121 (MQ=255)                                                                                                              ccccTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAAc                                                                 <  7:129320/121‑1 (MQ=255)                                                                                                              ccccTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATg                                     >  7:70840/1‑149 (MQ=255)                                                                                                              ccccTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATg                                     >  5:137442/1‑149 (MQ=255)                                                                                                                 cTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTa                                  <  8:70840/149‑1 (MQ=255)                                                                                                                     aCCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGcc                                                         <  2:100377/122‑1 (MQ=255)                                                                                                                     aCCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGcc                                                         >  1:100377/1‑122 (MQ=255)                                                                                                                          cgGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGc                         >  3:161961/1‑149 (MQ=255)                                                                                                                             cgcTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGCGtt                      <  2:76541/149‑1 (MQ=255)                                                                                                                                  cGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAATCCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGCGTTCaa                   <  1:59259/147‑1 (MQ=255)                                                                                                                                     gCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGCTCGCCAACGACAACCCGATCGCCGGCCGTGCCGACGGCCCATGGTCCTTCCCGGCGGTCAAGCGtt              >  2:271313/1‑149 (MQ=255)                                                                                                                                       gTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGCGTTCAAGCGTTAc            >  3:28099/1‑149 (MQ=255)                                                                                                                                           caaggccaACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGCGtt                      >  2:188130‑M2/9‑135 (MQ=255)                                                                                                                                                 caACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGCGTTCAAGCGTTACCCGGAAacca  >  4:216285‑M2/3‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   ATCTTCACCCTGCTAGGGCTGGTGGTGAAACTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTACGACGGCCAATGGTACTTCCCGGCGTTCAAGCGTTACCCGGAAACCA  >  NC_002947/4688003‑4688295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.