New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4688101 =	26 (0.620)	5 (0.130)	5/242	NT	14.2%	coding (2/1020 nt)	PP_4149	ABC transporter permease
	?	NC_002947	4688149 =	36 (0.910)					coding (50/1020 nt)	PP_4149	ABC transporter permease

CGAAGCGGCCATCAACCGCGACTACCCGGTGGTCTTCGGCACCCTGTTCATCTTCACCCTGCTAGGGCTGGTGGTGAAACTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTAC  >  NC_002947/4687954‑4688249                                                                                                                                                    |                                                                                                                                                     tggtttccgggtaacgcttgaacgccgggaagtaccattggccgtcgtaacgtacggcgatcggtttgtcgttggcgatcagttcggcgcccaggctcagcccgaacagaatcaggaacagccacagcgaccaccagccacggcggtTg                                                                                                                                                     >  4:216285‑M1/148‑149 (MQ=255)                     aacgccgggaagtaccattggccgtcgtaacgtacggcgatcggtttgtcgttggcgatcagttcggcgcccaggctcagcccgaacagaatcaggaacagccacagcgaccaccagccacggcggtTGGCCTTg                                                                                                                                               >  2:188130‑M1/128‑135 (MQ=255)                          ccGGTGGTCTTCGGCACCCTGTTCATCTTCACCCTGCTAGGGCTGGTGGTGAAACTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGgc                                                                                                                            >  1:76541/1‑149 (MQ=255)                                              gTTCATCTTCACCCTGCTAGGGCTGCTGCAGAAACTGATCGGCGACATGACCTACACCTTGCTCGATCCGCGCATCGACTTAGCCAGCCGGGACCACAGACATGCCCATGTCCCCCCTCAACCCCCGGCGCTTCGAGCGATTCAAgcc                                                                                                         >  4:114984/1‑146 (MQ=255)                                                  aTCTTCACCCTGCTAGGGCTGGTGGTGAAACTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAAcc                                                                                                    >  3:37358/1‑149 (MQ=255)                                                   cgtacggcgatcggtttgtcgttggcgatcagttcggcgcccaggctcagcccgaacagaatcaggaacagccacagcgaccaccagccacggcggtTGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAAccg                                                                                                   >  1:3252‑M1/98‑149 (MQ=255)                                                                gtttgtcgttggcgatcagttcggcgcccaggctcagcccgaacagaatcaggaacagccacagcgaccaccagccacggcggtTGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGttt                                                                                                               >  6:13260‑M1/85‑124 (MQ=255)                                                                gtttgtcgttggcgatcagttcggcgcccaggctcagcccgaacagaatcaggaacagccacagcgaccaccagccacggcggtTGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGttt                                                                                                               <  5:13260‑M1/40‑1 (MQ=255)                                                                 gggCTGGTGGTGAAACTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCGAGCGGGGAGCACTGACATGGCGTTGTCCCCCCTGAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCtggtg                                                                                       <  3:114984/147‑1 (MQ=255)                                                                 gggCTGGTGGTGAAACTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGGTTCAAGGCCAACCGCCGTGGCtggtg                                                                                       <  7:81492/147‑1 (MQ=255)                                                                                cTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTcc                                                                      <  8:70100/149‑1 (MQ=255)                                                                                 tGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCt                                                                     >  2:261350/1‑149 (MQ=255)                                                                                      ggCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTcc                                                                      >  5:257294/1‑143 (MQ=255)                                                                                              gacctACACCTTGGTGGATCCGCGGATCGACTTTGCCAGCCGGGAGGACTGACATGGCCTTGTCCGCCGTCAACCGCCGGCGCTTCGAGCGTTTc                                                                                                              <  4:181813/95‑1 (MQ=255)                                                                                              gacctACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCggg                                                        >  2:31786/1‑149 (MQ=255)                                                                                              gacctACACCTTGGTCGATCCGCGCATCGACTTTGACAGCCGGGAGCACTGACATCGCCTTGTCCCCACTCAACCGCCGGCGCTTCGAGCGTTTc                                                                                                              >  3:181813/1‑95 (MQ=255)                                                                                               acctACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCggg                                                        <  3:55387/148‑1 (MQ=255)                                                                                                  tACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCtggtg                                                                                       >  3:112908/1‑114 (MQ=255)                                                                                                  tACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCtggtg                                                                                       <  4:112908/114‑1 (MQ=255)                                                                                                   acacCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAg                                                   >  3:76027/1‑149 (MQ=255)                                                                                                     cccgaacagaatcaggaacagccacagcgaccaccagccacggcggtTGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAgg                                                                                                          >  1:162993‑M1/48‑92 (MQ=255)                                                                                                     cccgaacagaatcaggaacagccacagcgaccaccagccacggcggtTGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAgg                                                                                                          <  2:162993‑M1/45‑1 (MQ=255)                                                                                                        ttGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCTGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTc                                                                       <  7:22072/124‑1 (MQ=255)                                                                                                        ttGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCTGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTc                                                                       >  8:22072/1‑124 (MQ=255)                                                                                                        aaagTCGATGCGCGGATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTgg                                              >  2:176671/4‑149 (MQ=255)                                                                                                            tCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGgcgc                                          <  1:31786/149‑1 (MQ=255)                                                                                                                tgcgcgGATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGaa                                      <  1:176671/147‑1 (MQ=255)                                                                                                                tCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGaa                                      >  2:59259/1‑149 (MQ=255)                                                                                                                       aTCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCg                               >  5:235708/1‑149 (MQ=255)                                                                                                                            cTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAAc                          >  6:1198/1‑149 (MQ=255)                                                                                                                                   aGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAAc                   <  1:261350/149‑1 (MQ=255)                                                                                                                                   aGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAAc                   >  5:20368/1‑149 (MQ=255)                                                                                                                                       gggAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGAt               <  5:1198/149‑1 (MQ=255)                                                                                                                                               tGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTAc       >  1:154766/1‑149 (MQ=255)                                                                                                                                                 aCATGGCCTTGTCCCCCCTCACCCGCCGGCGCTTCGTGCGTTTGAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCTAc                          <  3:184649/128‑1 (MQ=255)                                                                                                                                                 aCATCGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTCGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCTCCGAACAGATCTCCAAc                          >  4:184649/1‑128 (MQ=255)                                                                                                                                                    TGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTac  <  1:160175‑M1/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGAAGCGGCCATCAACCGCGACTACCCGGTGGTCTTCGGCACCCTGTTCATCTTCACCCTGCTAGGGCTGGTGGTGAAACTGATCGGCGACCTGACCTACACCTTGGTCGATCCGCGCATCGACTTTGCCAGCCGGGAGCACTGACATGGCCTTGTCCCCCCTCAACCGCCGGCGCTTCGAGCGTTTCAAGGCCAACCGCCGTGGCTGGTGGTCGCTGTGGCTGTTCCTGATTCTGTTCGGGCTGAGCCTGGGCGCCGAACTGATCGCCAACGACAAACCGATCGCCGTACGTTAC  >  NC_002947/4687954‑4688249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.