New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4716860 =	44 (1.040)	3 (0.070)	3/250	NT	6.6%	intergenic (+159/‑49)	PP_4173/fabA	two‑component system sensor histidine kinase/response regulator/3R‑3‑hydroxydecanoyl‑ACP dehydratase
	?	NC_002947	4716886 =	42 (1.030)					intergenic (+185/‑23)	PP_4173/fabA	two‑component system sensor histidine kinase/response regulator/3R‑3‑hydroxydecanoyl‑ACP dehydratase

TCAGCATGTTCGGCGCGGGCAGTTGCGCATTACCTGGGCCGAACAGCTCACCGCGACTGCAGCGCAGCAGGTCTTCCCGAGTAAAGGCGTGTTGTTTGGTCATGCGAGCTCCTCAATAACCCCCTGCGGCAGGGGATGAATC‑TTCCCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4717011‑4716860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCACCCATAT  >  NC_002947/4716886‑4717033                                                                                                                                                                                                                                                                                                               TCAGCATGTTCGGCGCGGGCAGTTGCGCATTACCTGGGCCGAACAGCTCACCGCGACTGCAGCGCAGCAGGTCTTCCCGAGTAAAGGCGTGTTGTTTGGTCATGCGAGCTCCTCAATAACCCCCTGCGGCAGGGGATGAATC‑TTCCCGG                                                                                                                                                         >  8:241164/1‑149  CAGCATGTTCGGCGCGGGCAGTTGCGCATTACCTGGGCCGAACAGCTCACCGCGACTGCAGCGCAGCAGGTCTTCCCGAGTAAAGGCGTGTTGTTTGGTCATGCGAGCTCCTCAATAACCCCCTGCGGCAGGGGATGAATC‑TTCCCGGC                                                                                                                                                        >  4:225355/1‑149    GCATGTTCGGCGCGGGCAGTTGCGCATTACCTGGGCCGAACAGCTCACCGCGACTGCAGCGCAGCAGGTCTTCCCGAGTAAAGGCGTGTTGTTTGGTCATGCGAGCTCCTCAATAACCCCCTGCGGCAGGGGATGAATC‑TTCCCGGCCG                                                                                                                                                      >  5:113718/1‑149    GCATGTTCGGCGCGGGCAGTTGCGCATTACCTGGGCCGAACAGCTCACCGCGACTGCAGCGCAGCAGGTCTTCCCGAGTAAAGGAGTGTTGTTTGGTCAGGCGAGCTCCTCAATAACCCCCTGCGGCAGGGGAGGAATC‑TTCCCGGCCG                                                                                                                                                      >  2:192474/1‑149                                       CCGAACAGCTCACCGCGACTGCAGCGCAGCAGGTCTTCCCGAGTAAAGGCGTGTTGTTTGGTCATGCGAGCTCCTCAATAACCCCCTGCGGC‑CGGGAAGATTCATCCCCTGCCGCAGGGGGTTATTGAG                                                                                                                                       >  2:253914/1‑129                                                                                                                           CCTGCGGCAGGGGATGAATC‑TTCCCGGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGA                                                                       <  1:232232/109‑1                                                                                                                           CCTGCGGCAGGGGATGAATC‑TTCCCGGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGA                                                                       >  2:232232/1‑109                                                                                                                                                         GCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCACCCATAT  <  2:12984/149‑1                                                                                                                                                                                                                                                                                                               TCAGCATGTTCGGCGCGGGCAGTTGCGCATTACCTGGGCCGAACAGCTCACCGCGACTGCAGCGCAGCAGGTCTTCCCGAGTAAAGGCGTGTTGTTTGGTCATGCGAGCTCCTCAATAACCCCCTGCGGCAGGGGATGAATC‑TTCCCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4717011‑4716860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCACCCATAT  >  NC_002947/4716886‑4717033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.