New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4716860 =	44 (1.040)	3 (0.070)	3/250	NT	6.6%	intergenic (+159/‑49)	PP_4173/fabA	two‑component system sensor histidine kinase/response regulator/3R‑3‑hydroxydecanoyl‑ACP dehydratase
	?	NC_002947	4716886 =	42 (1.030)					intergenic (+185/‑23)	PP_4173/fabA	two‑component system sensor histidine kinase/response regulator/3R‑3‑hydroxydecanoyl‑ACP dehydratase

CTTAAACACTGGACAGGACCTTCATCGGACCTGAAAATAGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGC  >  NC_002947/4716713‑4717008                                                                                                                                                     |                                                                                                                                                      atatgggtgatgcgatcgaccatcagcatgttcggcgcgggcagttgcgcattacctgggccgaacagctcaccgcgactgcagcgcagcaggtcttcccgagtaaaggcgtgttgtttggtcatgcgagctcctcaataaccccctgc                                                                                                                                                       <  2:12984‑M1/1‑1 (MQ=255)      acacTGGACAGGACCTTCATCGGACCTGAAAATAGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGccggccgg                                                                                                                                                 <  8:163448/149‑1 (MQ=255)         cTGGACAGGACCTTCATCGGACCTGAAAATAGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGAAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCggg                                                                                                                                                >  7:16968/1‑147 (MQ=255)          tGGACAGGACCTTCATCGGACCTGAAAATAGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCggg                                                                                                                                                >  4:74993/1‑146 (MQ=255)                        aTCGGACCTGAAAATAGACGTTTCAGTGGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGc                                                                                                                               >  1:11982/1‑149 (MQ=255)                            gACCTGAAAATAGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAg                                                                                                                          <  8:16968/149‑1 (MQ=255)                               cTGAAAATAGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAgggg                                                                                                                       <  3:74993/149‑1 (MQ=255)                               cTGAAAATAGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAgggg                                                                                                                       >  6:133476/1‑149 (MQ=255)                                       aGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTAtt                                                                                                                 >  7:88306/1‑147 (MQ=255)                                       aGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTAtt                                                                                                                 >  7:92087/1‑147 (MQ=255)                                       aGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACACAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑Ga                                                                                                                                           <  1:60109/121‑1 (MQ=255)                                       aGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACACAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑Ga                                                                                                                                           >  2:60109/1‑121 (MQ=255)                                         aCGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTgag                                                                                                              <  3:54220/148‑1 (MQ=255)                                         aCGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGAATTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTgag                                                                                                              >  1:192474/1‑148 (MQ=255)                                                aGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCg                                                                                                       >  2:213355/1‑148 (MQ=255)                                                  t‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTgag                                                                                                              <  2:55333/139‑1 (MQ=255)                                                  t‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTgag                                                                                                              >  1:55333/1‑139 (MQ=255)                                                          cTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCaaa                                                                                             <  2:11982/149‑1 (MQ=255)                                                                ttcttTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAacac                                                                                       >  1:128060/1‑149 (MQ=255)                                                                   tttCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGcc                                                                                    >  6:113718/1‑149 (MQ=255)                                                                   cttCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAacac                                                                                       >  6:32107/2‑146 (MQ=255)                                                                   cttCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAacac                                                                                       <  5:32107/145‑1 (MQ=255)                                                                      tcaccgcgactgcagcgcagcaggtcttcccgagtaaaggcgtgttgtttggtcatgcgagctcctcaataaccccctgCGGCCGGGAA‑GATTCATCCCCTGCCGCAgg                                                                                                                         >  2:232232‑M1/80‑109 (MQ=255)                                                                      tcaccgcgactgcagcgcagcaggtcttcccgagtaaaggcgtgttgtttggtcatgcgagctcctcaataaccccctgCGGCCGGGAA‑GATTCATCCCCTGCCGCAgg                                                                                                                         <  1:232232‑M1/30‑1 (MQ=255)                                                                        ccAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCAt                                                                                                    <  3:24133/128‑1 (MQ=255)                                                                        ccAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCAt                                                                                                    >  4:24133/1‑128 (MQ=255)                                                                          aGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTc                                                                             >  7:107366/1‑149 (MQ=255)                                                                                    tgACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGAc                                                                     <  8:107366/147‑1 (MQ=255)                                                                                      aCTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACctgc                                                                 >  4:106428/1‑149 (MQ=255)                                                                                      aCTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACctgc                                                                 >  7:63124/1‑149 (MQ=255)                                                                                            accacAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgct                                                           <  8:63124/149‑1 (MQ=255)                                                                                             ccacAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgctg                                                          <  2:128060/149‑1 (MQ=255)                                                                                                          gTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGa                                              <  5:133476/148‑1 (MQ=255)                                                                                                          gTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAg                                             <  1:213355/149‑1 (MQ=255)                                                                                                             tACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTAGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAgaag                                          >  2:103870/1‑146 (MQ=255)                                                                                                                 tGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCg                                      >  7:241164/1‑149 (MQ=255)                                                                                                                  gTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCgg                                     >  7:115753/1‑149 (MQ=255)                                                                                                                      gCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCACTGACGCAGGGGGTTATTGAGGAGATCGCATGACCAAACAACACGCCATTACTAGGGAAGAACTGCTGCTCTGCAGTCGCGGTGAGCTGTTCGGACCa                                 >  5:30952/1‑149 (MQ=255)                                                                                                                           cGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTaa                            >  8:37173/1‑149 (MQ=255)                                                                                                                                      ctcaataaccccctgCGGCAGGGGATGAATCTTCCCG‑GCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCgg                                     >  2:253914‑M1/16‑129 (MQ=255)                                                                                                                                       cTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCTGGTAATGCGCCTCTGcc                >  8:185479/1‑149 (MQ=255)                                                                                                                                       cTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGcc                <  7:37173/149‑1 (MQ=255)                                                                                                                                        ttGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgct                                                           <  6:118983/105‑1 (MQ=255)                                                                                                                                        ttGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgct                                                           >  5:118983/1‑105 (MQ=255)                                                                                                                                            ttttCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGTGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTTAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCgcgc           <  1:103870/149‑1 (MQ=255)                                                                                                                                            ttttCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgctg                                                          <  3:28866/102‑1 (MQ=255)                                                                                                                                            ttttCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgctg                                                          >  4:28866/1‑102 (MQ=255)                                                                                                                                              ttCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGcc          >  2:17802/1‑148 (MQ=255)                                                                                                                                                cGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGaa       >  3:225355/1‑149 (MQ=255)                                                                                                                                                    ccggccggGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATg   >  4:27409/1‑149 (MQ=255)                                                                                                                                                     CGGCCGGGAA‑GATTCCTCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCCTGACCAAACAACACTCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGc  >  2:192474‑M1/1‑149 (MQ=255)                                                                                                                                                     CGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGc  >  5:113718‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CTTAAACACTGGACAGGACCTTCATCGGACCTGAAAATAGACGTTTCAGT‑GCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGC  >  NC_002947/4716713‑4717008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.