New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4716860 =	44 (1.040)	3 (0.070)	3/250	NT	6.6%	intergenic (+159/‑49)	PP_4173/fabA	two‑component system sensor histidine kinase/response regulator/3R‑3‑hydroxydecanoyl‑ACP dehydratase
	?	NC_002947	4716886 =	42 (1.030)					intergenic (+185/‑23)	PP_4173/fabA	two‑component system sensor histidine kinase/response regulator/3R‑3‑hydroxydecanoyl‑ACP dehydratase

GACCTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCACCCATAT  >  NC_002947/4716740‑4717033                                                                                                                                                    |                                                                                                                                                    gACCTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAg                                                                                                                                                   <  8:16968/149‑1 (MQ=255)    cTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAgggg                                                                                                                                                >  6:133476/1‑149 (MQ=255)    cTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAgggg                                                                                                                                                <  3:74993/149‑1 (MQ=255)            aGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTAtt                                                                                                                                          >  7:88306/1‑147 (MQ=255)            aGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTAtt                                                                                                                                          >  7:92087/1‑147 (MQ=255)              aCGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTgag                                                                                                                                       <  3:54220/148‑1 (MQ=255)              aCGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGAATTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTgag                                                                                                                                       >  1:192474/1‑148 (MQ=255)                     aGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCg                                                                                                                                >  2:213355/1‑148 (MQ=255)                       tGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTgag                                                                                                                                       >  1:55333/1‑139 (MQ=255)                       tGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTgag                                                                                                                                       <  2:55333/139‑1 (MQ=255)                              cTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCaaa                                                                                                                      <  2:11982/149‑1 (MQ=255)                                  ccgaacagctcaccgcgactgcagcgcagcaggtcttcccgagtaaaggcgtgttgtttggtcatgcgagctcctcaataaccccctgcggccgggaagattcatcccctgccgCAGGGGGTTATTgag                                                                                                                                       >  2:253914‑M2/115‑129 (MQ=255)                                    ttcttTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAacac                                                                                                                >  1:128060/1‑149 (MQ=255)                                       tttCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGcc                                                                                                             >  6:113718/1‑149 (MQ=255)                                       cttCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAacac                                                                                                                >  6:32107/2‑146 (MQ=255)                                       cttCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAacac                                                                                                                <  5:32107/145‑1 (MQ=255)                                          tcaccgcgactgcagcgcagcaggtcttcccgagtaaaggcgtgttgtttggtcatgcgagctcctcaataaccccctgCGGCCGGGAA‑GATTCATCCCCTGCCGCAgg                                                                                                                                                  <  1:232232‑M1/30‑1 (MQ=255)                                          tcaccgcgactgcagcgcagcaggtcttcccgagtaaaggcgtgttgtttggtcatgcgagctcctcaataaccccctgCGGCCGGGAA‑GATTCATCCCCTGCCGCAgg                                                                                                                                                  >  2:232232‑M1/80‑109 (MQ=255)                                            ccAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCAt                                                                                                                             <  3:24133/128‑1 (MQ=255)                                            ccAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCAt                                                                                                                             >  4:24133/1‑128 (MQ=255)                                              aGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTc                                                                                                      >  7:107366/1‑149 (MQ=255)                                                        tgACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGAc                                                                                              <  8:107366/147‑1 (MQ=255)                                                          aCTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACctgc                                                                                          >  7:63124/1‑149 (MQ=255)                                                          aCTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACctgc                                                                                          >  4:106428/1‑149 (MQ=255)                                                                accacAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgct                                                                                    <  8:63124/149‑1 (MQ=255)                                                                 ccacAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgctg                                                                                   <  2:128060/149‑1 (MQ=255)                                                                              gTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGa                                                                       <  5:133476/148‑1 (MQ=255)                                                                              gTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAg                                                                      <  1:213355/149‑1 (MQ=255)                                                                                 tACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTAGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAgaag                                                                   >  2:103870/1‑146 (MQ=255)                                                                                     tGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCg                                                               >  7:241164/1‑149 (MQ=255)                                                                                      gTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCgg                                                              >  7:115753/1‑149 (MQ=255)                                                                                          gCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCACTGACGCAGGGGGTTATTGAGGAGATCGCATGACCAAACAACACGCCATTACTAGGGAAGAACTGCTGCTCTGCAGTCGCGGTGAGCTGTTCGGACCa                                                          >  5:30952/1‑149 (MQ=255)                                                                                               cGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTaa                                                     >  8:37173/1‑149 (MQ=255)                                                                                                          ctcaataaccccctgCGGCAGGGGATGAATCTTCCCG‑GCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCgg                                                              >  2:253914‑M1/16‑129 (MQ=255)                                                                                                           cTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCTGGTAATGCGCCTCTGcc                                         >  8:185479/1‑149 (MQ=255)                                                                                                           cTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGcc                                         <  7:37173/149‑1 (MQ=255)                                                                                                            ttGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgct                                                                                    >  5:118983/1‑105 (MQ=255)                                                                                                            ttGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgct                                                                                    <  6:118983/105‑1 (MQ=255)                                                                                                                ttttCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGTGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTTAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCgcgc                                    <  1:103870/149‑1 (MQ=255)                                                                                                                ttttCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgctg                                                                                   >  4:28866/1‑102 (MQ=255)                                                                                                                ttttCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTgctgcgctg                                                                                   <  3:28866/102‑1 (MQ=255)                                                                                                                  ttCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGcc                                   >  2:17802/1‑148 (MQ=255)                                                                                                                    cGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGaa                                >  3:225355/1‑149 (MQ=255)                                                                                                                      cctgcggcaggggatgaatcttcccggccgCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGa                                                                       <  1:232232‑M2/79‑1 (MQ=255)                                                                                                                      cctgcggcaggggatgaatcttcccggccgCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGa                                                                       >  2:232232‑M2/31‑109 (MQ=255)                                                                                                                        ccggccggGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATg                            >  4:27409/1‑149 (MQ=255)                                                                                                                         CGGCCGGGAA‑GATTCCTCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCCTGACCAAACAACACTCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGc                           >  2:192474‑M1/1‑149 (MQ=255)                                                                                                                         CGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGc                           >  5:113718‑M1/1‑149 (MQ=255)                                                                                                                           GCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTg                         >  4:225355‑M1/1‑149 (MQ=255)                                                                                                                            CCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGa                        >  8:241164‑M1/1‑149 (MQ=255)                                                                                                                                         aTCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGc             <  8:115753/148‑1 (MQ=255)                                                                                                                                         aTCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCa            <  8:88306/149‑1 (MQ=255)                                                                                                                                         aTCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCa            <  8:92087/149‑1 (MQ=255)                                                                                                                                           ccccTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATc          >  1:12984/1‑149 (MQ=255)                                                                                                                                              cTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCa         <  6:260218/147‑1 (MQ=255)                                                                                                                                              cTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCa         >  5:260218/1‑147 (MQ=255)                                                                                                                                                   gCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCACCCatat  <  2:12984‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GACCTGAAAATAGACGTTTCAGTGCACACCTGTACTTCTTTCGCCAGGTGCGCTGTGACTTTCACCACAACGCAATAGTCTACCTGTAGGCTGCCGTCTCGAAGCGCTTGGTTTTCGGGCCGGCCGGGAA‑GATTCATCCCCTGCCGCAGGGGGTTATTGAGGAGCTCGCATGACCAAACAACACGCCTTTACTCGGGAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCACCCATAT  >  NC_002947/4716740‑4717033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.