New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4795079 | 34 (0.810) | 3 (0.070) | 3/246 | NT | 8.6% | intergenic (‑101/+5) | PP_4222/pvdH | protein SyrP/diaminobutyrate‑2‑oxoglutarate transaminase |
? | NC_002947 | = 4795114 | 31 (0.770) | coding (1329/1359 nt) | pvdH | diaminobutyrate‑2‑oxoglutarate transaminase |
GCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4794928‑4795079 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcTGCAGTCGCCGCCGCCGTAGGCAGCGTTTGACGCCGCGCTGCATGCCACTGTTTGACGCGGTCGGCCTGCAAGGCTGGCCGCCAACCCAAGCGTGTCGACGGTCTCTACGGAGCCTGGCGACAAGGAGAGCGAAACATGAGTGTA < NC_002947/4795114‑4794970 GCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAG > 4:20136/1‑149 CCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGC > 2:190034/1‑149 ACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCTGCAGTCGCCGCCGCCGTAGGCAGCGTTTGACGCC > 3:54335/1‑142 ACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCTGCAGTCGCCGCCGCCGTAGGCAGCGTTTGACGCC < 4:54335/142‑1 ATGTTTCGCTCTCCTTGTGGCCAGGCTCCGTAGTGACCGTCCACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGTCCGCTTCAAACAGTGGCATGCAGCGCTGCAGTCGCCGCCGCCGTAGGACGCGTTTGACGCCGCGCTGCATG < 7:41363/148‑1 CAGCGCTGCAGTCGCCGCCGCCGTAGGCAGCGTTTGACGCCGCGCTGCATGCCACTGTTTGACGCGGTCGGCCTGCAAGGCTGGCCGCCAACCCAAGCGTGTCGACGGTCTCTACGGAGCCTGGCGACAAGGAGAGCGAAACATGAG < 1:157506/147‑1 AGCGCTGCAGTCGCCGCCGCCGTAGGCAGCGTTTGACGCCGCGCTGCATGCCACTGTTTGACGCGGTCGGCCTGCAAGGCTGGCCGCCAACCCAAGCGTGTCGACGGTCTCTACGGAGCCTGGCGACAAGG < 1:252848/131‑1 AGCGCTGCAGTCGCCGCCGCCGTAGGCAGCGTTTGACGCCGCGCTGCATGCCACTGTTTGACGCGGTCGGCCTGCAAGGCTGGCCGCCAACCCAAGCGTGTCGACGGTCTCTACGGAGCCTGGCGACAAGG > 2:252848/1‑131 GCGCTGCAGTCGCCGCCGCCGTAGGCAGCGTTTGACGCCGCGCTGCATGCCACTGTTTGACGCGGTCGGCCTGCAAGGCTGGCCGCCAACCCAAGCGTGTCGACGGTCTCTACGGAGCCTGGCGACAAGGAGAGCGAAACATGAGTGTA < 5:96220/149‑1 GCGCTGCAGTCGCCGCCGCCGTAGGCAGCGTTTGACGCCGCGCTGCATGCCACTGTTTGACGCGGTCGGCCTGCAAGGCTGGCCGCCAACCCAAGCGTGTCGACGGTCTCTACGGAGCCTGGCGACAAGGAGAGCGAAACATGAGTGTA < 6:260111/149‑1 GCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4794928‑4795079 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgcTGCAGTCGCCGCCGCCGTAGGCAGCGTTTGACGCCGCGCTGCATGCCACTGTTTGACGCGGTCGGCCTGCAAGGCTGGCCGCCAACCCAAGCGTGTCGACGGTCTCTACGGAGCCTGGCGACAAGGAGAGCGAAACATGAGTGTA < NC_002947/4795114‑4794970 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |