| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4795079 | 34 (0.810) | 3 (0.070) | 3/246 | NT | 8.6% | intergenic (‑101/+5) | PP_4222/pvdH | protein SyrP/diaminobutyrate‑2‑oxoglutarate transaminase |
| ? | NC_002947 | = 4795114 | 31 (0.770) | coding (1329/1359 nt) | pvdH | diaminobutyrate‑2‑oxoglutarate transaminase | |||||
ATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGCCCCATGCCGCCCACCCAACTCCAGGATCAGCCCGCG > NC_002947/4794941‑4795224 | aTCAATGGCCGCGCCTTGATCCCGGCATGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAAc < 4:170192/149‑1 (MQ=255)aTCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAAc < 6:98634/149‑1 (MQ=255) tCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACg > 8:6313/1‑149 (MQ=255) aaTGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCt < 8:241027/149‑1 (MQ=255) cgcgCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTAc < 1:190034/149‑1 (MQ=255) ccTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTAcggcg > 1:96958/1‑149 (MQ=255) gATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTAcggcggc < 2:96958/147‑1 (MQ=255) gTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTc < 8:137446/117‑1 (MQ=255) gTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTc > 7:137446/1‑117 (MQ=255) tACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAgcgc < 5:96220‑M2/149‑5 (MQ=255) tACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAgcgc < 6:260111‑M2/149‑5 (MQ=255) acTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCtgcagtcgccgccgccgtaggcagcgtttgacgcc < 4:54335‑M1/142‑36 (MQ=255) acTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCtgcagtcgccgccgccgtaggcagcgtttgacgcc > 3:54335‑M1/1‑107 (MQ=255) cTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAgcgctg < 1:157506‑M2/147‑7 (MQ=255) tCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAg > 4:89355/1‑149 (MQ=255) aTGTTTCGCTCTCCTTGTGGCCAGGCTCCGTAGTGACCGTCCACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGTCCGCTTCAAACAGTGGCATGCAGCGCtgcagtcgccgccgccgtaggacgcgtttgacgccgcgctgcatg < 7:41363‑M1/148‑46 (MQ=255) tttCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTg < 5:257463/149‑1 (MQ=255) aagcgtgtcgacggtctctacggagcctggcgacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAAcc > 2:243384‑M2/36‑149 (MQ=255) ccTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAgcgct > 2:252848‑M2/1‑126 (MQ=255) ccTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAgcgct < 1:252848‑M2/131‑6 (MQ=255) cTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCtc < 7:90215/148‑1 (MQ=255) GCCAGGCTCCGTAGAGACCGTCGACACGCTTGAGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATc < 7:46211‑M1/149‑1 (MQ=255) ccAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTAcg < 7:84480/103‑1 (MQ=255) ccAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTAcg > 8:84480/1‑103 (MQ=255) acggtctctacggagcctggcgacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCt < 1:243384‑M2/124‑1 (MQ=255) cggtctctacggagcctggcgacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACg > 2:228318‑M2/25‑93 (MQ=255) cggtctctacggagcctggcgacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACg < 1:228318‑M2/69‑1 (MQ=255) gCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTc < 8:46211/149‑1 (MQ=255) cGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCa < 2:54033/149‑1 (MQ=255) tAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACt < 7:6313/149‑1 (MQ=255) agagACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACt > 5:250226/1‑148 (MQ=255) agaCCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACtgat < 5:260111/149‑1 (MQ=255) aCCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACtgatga < 3:20136/149‑1 (MQ=255) aCCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTCGGCAACCTCGTCGATCTGCTCGGCACtgatga > 3:172708/1‑149 (MQ=255) cGTCGACACGCTTGGGTTGGCGGCCAGCATTGCAGGCAGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATATGCTCGGCACTgatgat > 2:150353/1‑148 (MQ=255) tCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCaa > 5:197822/1‑149 (MQ=255) gacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCt > 8:72325‑M2/5‑75 (MQ=255) gacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCt < 7:72325‑M2/71‑1 (MQ=255) acaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTTAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAAcgg < 4:171071‑M2/146‑1 (MQ=255) acaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAAcgg < 4:98521‑M2/146‑1 (MQ=255) caCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAAcggc > 2:240408‑M2/3‑149 (MQ=255) gTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGaaa < 6:96220/149‑1 (MQ=255) gcCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGcacca > 8:231653/1‑149 (MQ=255) gcCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGcacca > 8:235191/1‑149 (MQ=255) gCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGc < 7:231653/149‑1 (MQ=255) gCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGc < 7:235191/149‑1 (MQ=255) tGCAGGCCGGCCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGCCCCa > 3:153514/1‑149 (MQ=255) aaaCAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGCCCCATGCCGCCCACCCAACTc > 2:172262/1‑149 (MQ=255) aCAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGCCCCATGCCGCCCACCCAACTCCa < 3:89355/149‑1 (MQ=255) aGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGCCCCATGCCGCCCACCCAACTCCAgg < 4:172708/149‑1 (MQ=255) gCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGCCCCATGCCGCCCACCCaa > 6:156282/1‑138 (MQ=255) gCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGCCCCATGCCGCCCACCCaa < 5:156282/138‑1 (MQ=255) cATGCAGCGCGGCGTCAAACGCGTCCTACGGCGGCGGCGACTGCAgcgctgcatgccactgtttgaagcggacggcctgcaaggctggccgccaacccaagcgtgtggacggtcactacggagcctggccacaaggagagcgaaacat < 7:41363‑M2/148‑104 (MQ=255) cAGCGCtgcagtcgccgccgccgtaggcagcgtttgacgccgcgctgcatgccactgtttgacgcggtcggcctgcaaggctggccgccaacccaagcgtgtcgacggtctctacggagcctggcgacaaggagagcgaaacatgag < 1:157506‑M1/147‑142 (MQ=255) aGCGCtgcagtcgccgccgccgtaggcagcgtttgacgccgcgctgcatgccactgtttgacgcggtcggcctgcaaggctggccgccaacccaagcgtgtcgacggtctctacggagcctggcgacaagg > 2:252848‑M1/1‑5 (MQ=255) aGCGCtgcagtcgccgccgccgtaggcagcgtttgacgccgcgctgcatgccactgtttgacgcggtcggcctgcaaggctggccgccaacccaagcgtgtcgacggtctctacggagcctggcgacaagg < 1:252848‑M1/131‑127 (MQ=255) gcgctgcagtcgccgccgccgtaggcagcgtttgacgccgcgctgcatgccactgtttgacgcggtcggcctgcaaggctggccgccaacccaagcgtgtcgacggtctctacggagcctggcgacaaggagagcgaaacatgagtgta < 6:260111‑M1/149‑146 (MQ=255) gcgctgcagtcgccgccgccgtaggcagcgtttgacgccgcgctgcatgccactgtttgacgcggtcggcctgcaaggctggccgccaacccaagcgtgtcgacggtctctacggagcctggcgacaaggagagcgaaacatgagtgta < 5:96220‑M1/149‑146 (MQ=255) gcgcGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGCCCCATGCCGCCCACCCAACTCCAGGATCAGCCcgcg > 3:87275/1‑149 (MQ=255) cggcgTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGCCCCATGCCGCCCACCCAACTCCAg > 3:147132/1‑134 (MQ=255) cggcgTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGCCCCATGCCGCCCACCCAACTCCAg < 4:147132/134‑1 (MQ=255) | ATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGCGGCAGGAAACGCACCACCGCCCCATGCCGCCCACCCAACTCCAGGATCAGCCCGCG > NC_002947/4794941‑4795224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |