New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4880260 = | 32 (0.760) | 4 (0.100) | 3/242 | NT | 13.6% | coding (870/1341 nt) | PP_4289 | membrane protein |
? | NC_002947 | 4880298 = | 21 (0.530) | coding (908/1341 nt) | PP_4289 | membrane protein |
CGGCGGGTGCTTCGGCAGCCTTGGCGGCGTCCTCGGCACGCTGCTCGGCAGCCGTCTTGCCGCCTACCGCAGTTGCCGGCAGCGGCTGGTACTCGATCTTCGCTGCGGCTTGCTCAGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4880414‑4880260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaagccCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGGCCGCTGC > NC_002947/4880298‑4880445 CGGCGGGTGCTTCGGCAGCCTTGGCGGCGTCCTCGGCACGCTGCTCGGCAGCCGTCTTGCCGCCTACCGCAGTTGCCGGCAGCGGCTGGTACTCGATCTTCGCTGCGGCTTGCTCAGGGCTTACGGCAATCGGTTTCGGGCCGGTAAC < 1:179196/148‑1 GCTTCGGCAGCCTTGGCGGCGTCCTCGGCACGCTGCTCGGCAGCCGTCTTGCCGCCTACCGCAGTTGCCGGCAGCGGCTGGTACTCGATCTTCGCTGCGGCTTGCTCAGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGT < 7:95393/142‑1 GCTTCGGCAGCCTTGGCGGCGTCCTCGGCACGCTGCTCGGCAGCCGTCTTGCCGCCTACCGCAGTTGCCGGCAGCGGCTGGTACTCGATCTTCGCTGCGGCTTGCTCAGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGT > 8:95393/1‑142 AGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAG > 6:10284/1‑148 AGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAA > 5:170837/1‑147 AGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAA < 6:170837/147‑1 GGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCTGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGACGCAC > 5:192616/1‑149 CGTAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGG > 3:232534/1‑149 TAAGCCCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGGCC < 5:10284/149‑1 CCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGGCCGCTGC > 5:7275/1‑149 CGGCGGGTGCTTCGGCAGCCTTGGCGGCGTCCTCGGCACGCTGCTCGGCAGCCGTCTTGCCGCCTACCGCAGTTGCCGGCAGCGGCTGGTACTCGATCTTCGCTGCGGCTTGCTCAGGGCTTACGGCAATCGGTTTCGGGCCGGTAACGTAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4880414‑4880260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaagccCTGAGCAAGCCGCAGCGAAGATCGAGTACCAGCCGCTGCCGGCAACTGCGGTAGGCGGCAAGACGGCTGCCGAGCAGCGTGCCGAGGACGCCGCCAAGGCTGCCGAAGCACCCGCCGCACCTGCGCAAGCACCGGCCCAGGCCGCTGC > NC_002947/4880298‑4880445 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |