New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4893579	36 (0.850)	4 (0.120)	4/204	NT	11.9%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4893604	31 (0.930)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter

AGATTGCCCAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4893410‑4893579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacacaaggccgctcccacagggACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGCTTGCCGAAAGGCACGCCAGCG  <  NC_002947/4893604‑4893462                                                                                                                                                                                                                                                                                                                            AGATTGCCCAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGA                                                                                                                                                                       <  2:39196/149‑1   ATTGCCCAGGCGCAAGGCGTGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACA                                                                                                                                                                     >  2:194442/1‑149        CCAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGG                                                                                                                                                                >  5:70676/1‑149             CGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCT                                                                                                                                                           >  6:66094/1‑149                AAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAACCCGGGTACGACTAACACGCTGCGTATCGAGACTTTGATCTGAGATTTCCGGGGGCGCGTTGCTCCCATTTCTCGACACAAGGCCGCTCC                                                                                                                                                         >  4:251226/1‑148                     gTGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGG                                                                                                                                                   <  1:194442/148‑1                     ATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAATGCCGCTGCCcccgg                                                                                                                                                   >  1:220788/1‑144                                                          GCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGA                                                                                                               <  7:96019/148‑1                                                            GTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGG                                                                                                                 <  5:112486/144‑1                                                            GTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGG                                                                                                                 >  6:112486/1‑144                                                                     GGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGT                                                                                                   <  5:66094/149‑1                                                                                                                                              acTCGCGACACAAGGCCCCCCCCCCAGGGACTGCATTCCCTTGGGCCAGCGTGGCCCTGGGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTC                                <  2:220227/140‑1                                                                                                                                                   CGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGCTTG                    >  5:270614/1‑149                                                                                                                                                   CGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCGGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGCTTG                    <  7:85407/149‑1                                                                                                                                                        CAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGCTTGCCGAA               <  7:65442/149‑1                                                                                                                                                                 TCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGCTTGCCGAAAGGCACGC       >  3:109299/1‑148                                                                                                                                                                 TCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGT                                     >  5:144058/1‑118                                                                                                                                                                 TCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGT                                     <  6:144058/118‑1                                                                                                                                                                   CCACAGGGACTGCATTCCCTTGTGCCAGCGGGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCGCCCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGCTTGCCGAAAGGCACGC       <  1:215319/147‑1                                                                                                                                                                     ACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGCTTGCCGAAAGGCACGCCAGCG  >  1:249684/1‑149                                                                                                                                                                      CAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGC                       >  7:253465/1‑127                                                                                                                                                                      CAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGC                       >  7:121709/1‑127                                                                                                                                                                      CAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGC                       <  8:121709/127‑1                                                                                                                                                                      CAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGC                       <  8:253465/127‑1                                                                                                                                                                                                                                                                                                                            AGATTGCCCAGGCGCAAGGCATGGCCAGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4893410‑4893579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacacaaggccgctcccacagggACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCAACGCG‑CCCCCGGCAATCTCAGATCAAAGTCTCGATCCGCAGCGTGTTAGTCGTACCCGGCTTGCCGAAAGGCACGCCAGCG  <  NC_002947/4893604‑4893462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.