| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4893579 | 36 (0.850) | 4 (0.120) | 4/204 | NT | 11.9% | intergenic (+54/‑154) | pyk/PP_4302 | pyruvate kinase/urea transporter |
| ? | NC_002947 | = 4893604 | 31 (0.930) | intergenic (+79/‑129) | pyk/PP_4302 | pyruvate kinase/urea transporter | |||||
CGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACC > NC_002947/4893462‑4893741 | cGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgt > 1:249684‑M2/1‑143 (MQ=255) gCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCCCGCTGGCACAAGGGAATGCAGTccctgtgg < 1:215319‑M2/147‑9 (MQ=255) gCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtggga > 3:109299‑M2/1‑138 (MQ=255) ttCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttg < 7:65442‑M2/149‑20 (MQ=255) cAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACCGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcg < 7:85407‑M2/149‑25 (MQ=255) cAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcg > 5:270614‑M2/1‑125 (MQ=255) gCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctg < 8:121709‑M2/127‑6 (MQ=255) gCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctg > 7:121709‑M2/1‑122 (MQ=255) gCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctg < 8:253465‑M2/127‑6 (MQ=255) gCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctg > 7:253465‑M2/1‑122 (MQ=255) cGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTATCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGAtt > 2:68098/1‑149 (MQ=255) aCGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAgg > 2:14490/1‑149 (MQ=255) gACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCCCAGGGCCACGCTGGCCCAAGGGAATGCAGTccctggggggggggccttgtgtcgcgagt < 2:220227‑M2/142‑30 (MQ=255) gACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACCGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGAtt < 1:220227/142‑1 (MQ=255) acacGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtggga > 5:144058‑M2/1‑108 (MQ=255) acacGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtggga < 6:144058‑M2/118‑11 (MQ=255) gcggCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGccctc < 6:70676/146‑1 (MQ=255) gATCGAGACTTTTCTCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGccctccct < 7:197555/146‑1 (MQ=255) gATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCACCCACAGGGCCACGCAGGCACAAAGGAAAGCAGTACCAGTGGGGGCGGCCTTGTGTGGCGATTGGAGGGCAAACcccaccca > 8:197555/1‑145 (MQ=37) agaCTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCg < 7:115179/149‑1 (MQ=255) agaCTTTGATCTGACATTGCCGGGGG‑CGCGTGGCGCCCCTTGCGCGCCACACGGCCGCACCCACAGGGCCACGCTGCCACAAGGGAATGCAGGCCCTGGGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCg < 3:78794/149‑1 (MQ=38) tCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCGGGCCCAAGGGCATGCAGTCCCTGTGGGCGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCGGAATACCGCTCTACCCg > 2:59992/1‑149 (MQ=39) aTTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTACCACAGGGCCACCCTGGCACAAGGGAATGCAGTCCCGGTGGGAGCGGCCGTGTGTAGCGATTTGAGGGCAAAGCCCTACCGGAATAACCCAAAACCCGACcgcg > 8:236879/1‑149 (MQ=37) cgaaagggg‑CGCAACGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCACTACCCGACCGCgg > 5:230024/6‑148 (MQ=39) ccGGGGG‑CGCGTTGCGCCCCGTGCGCTACACACGGCCCCTCCCAAAGGGCCACGCTGGCACAAGGTAATGCAGACCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGaaa < 3:200899/149‑1 (MQ=38) gcgcCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCACTACCCGACCGCGGAAAACCGAGGCCCaaa < 6:230024/149‑1 (MQ=255) cccTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAgg < 1:14490/149‑1 (MQ=255) cgcgACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCAc < 8:65442/148‑1 (MQ=255) acacAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGTAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTc < 7:236879/149‑1 (MQ=255) acacAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgcc < 5:66094‑M2/149‑103 (MQ=255) acaAGGCCGGTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTccc < 8:85407/149‑1 (MQ=255) aaGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAg < 1:199522/124‑1 (MQ=255) aaGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAg > 2:199522/1‑124 (MQ=255) ggCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTccccc > 1:31215/1‑147 (MQ=255) ggCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTccccc < 2:31215/147‑1 (MQ=255) gCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAAc < 4:44023/149‑1 (MQ=255) tCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgc < 7:96019‑M2/148‑114 (MQ=255) cccACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTc < 1:68098/149‑1 (MQ=255) cccACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTc > 7:196514/1‑149 (MQ=255) ccACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcac < 5:112486‑M2/144‑112 (MQ=255) ccACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcac > 6:112486‑M2/1‑33 (MQ=255) ccACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAAcc < 8:213050/111‑1 (MQ=255) ccACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAAcc > 7:213050/1‑111 (MQ=255) ccACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGAACGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTc > 6:254427/1‑148 (MQ=255) cacaGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCg < 5:196736/88‑1 (MQ=255) cacaGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCg > 6:196736/1‑88 (MQ=255) ggCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGc > 8:205410/1‑143 (MQ=255) ggCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGc < 7:205410/143‑1 (MQ=255) aaGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTacac > 7:47723/1‑149 (MQ=255) gggAATGCAGTCCCTGTGGGAGAGGACTTGTGTCGCGATTGGAGGTCAAAGCACTCCCTGAATACCGCTCTACACGACCGCGCAAAACCGAGGCCCAAAGCGGCCCACCGATCGCCCATCAACCTCCACTGACTGCCCCATGTACAcc > 8:196791/1‑148 (MQ=255) | CGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGG‑CGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACC > NC_002947/4893462‑4893741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |