New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4954611	38 (0.900)	3 (0.070)	3/248	NT	7.8%	coding (135/306 nt)	PP_4364	anti‑sigma F factor antagonist
	?	NC_002947	= 4954648	34 (0.840)					coding (98/306 nt)	PP_4364	anti‑sigma F factor antagonist

ACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4954510‑4954611 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgCCTACGAACGCCAGCCCAGGCGGCCGGATTCGGTGGTCGTCGACCTGAAGGACACCACCTACCTCGACAGCTCCGCGCTCGGCATGCTGCTGTTGCTGCGCGACCACGCGGGCGGCGACGAGTCGGATGTGCGGGTAGTGCATGC  <  NC_002947/4954648‑4954504                                                                                                                                                                                                                                                         ACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGCCTACGAACGCCAGCCCAGGCGGCCGGATTCGGTGGTCGTCGACCTG                                                                                                    <  4:113432/149‑1      CCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGCCTACGAACGCCAGCCCAGGCGGCCGGATTCGGTGGTCGTCGAC                                                                                                       <  7:9597/141‑1      CCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGCCTACGAACGCCAGCCCAGGCGGCCGGATTCGGTGGTCGTCGAC                                                                                                       >  8:9597/1‑141                                                                                                   GACGCCTACGAACGCCAGCCCAGGCGGCCGGATTCGGTGGTCGTCGACCTGAAGGACACCACCTACCTCGACAGCTCCGCGCTCGGCATGCTGCTGTTGCTGCGCGACCACGCGGGCGGCGACGAGTCGGATGTGCGGGTAGTGCATGC  <  5:171753/149‑1                                                                                                                                                                                                                                                         ACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4954510‑4954611 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgCCTACGAACGCCAGCCCAGGCGGCCGGATTCGGTGGTCGTCGACCTGAAGGACACCACCTACCTCGACAGCTCCGCGCTCGGCATGCTGCTGTTGCTGCGCGACCACGCGGGCGGCGACGAGTCGGATGTGCGGGTAGTGCATGC  <  NC_002947/4954648‑4954504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.