New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4954611	38 (0.900)	3 (0.070)	3/248	NT	7.8%	coding (135/306 nt)	PP_4364	anti‑sigma F factor antagonist
	?	NC_002947	= 4954648	34 (0.840)					coding (98/306 nt)	PP_4364	anti‑sigma F factor antagonist

GAGAATCTTGCGCACATCGGAGCTGGCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGATTCCT  >  NC_002947/4954479‑4954758                                                                                                                                     |                                                                                                                                                    gagaATCTTGCGCACATCGGAGCTGGCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGgcc                                                                                                                                     >  6:147069/1‑149 (MQ=255)  agaATCTTGCGCACATCGGAGCTGGCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCAACGACCACCGAATCCGgccg                                                                                                                                    >  8:25485/1‑149 (MQ=255)           cgcACATCGGAGCTGGCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTg                                                                                                                           <  5:121279/149‑1 (MQ=255)             cacaTCGGAGCTGGCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGc                                                                                                                         <  5:201075/149‑1 (MQ=255)             cacaTCGGAGCTGGCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCAACGACCACCGAATCCGGCCGCCTGGGCTGGc                                                                                                                         <  7:25485/149‑1 (MQ=255)                aTCGGAGCTGGCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGtt                                                                                                                      >  4:255508/1‑149 (MQ=255)                    gAGCTGGCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTa                                                                                                                  <  8:59830/149‑1 (MQ=255)                     aGCTGGCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAg                                                                                                                 <  6:212395/149‑1 (MQ=255)                     aGCTGGCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGGCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAg                                                                                                                 <  5:147069/149‑1 (MQ=255)                          gCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGcgtc                                                                                                            <  5:171753‑M2/149‑5 (MQ=255)                                aCTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGcctacgaacgccagcccaggcggccggattcggtggtcgtcgacctg                                                                                                      <  4:113432‑M1/149‑48 (MQ=255)                                 cTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAAc                                                                                                     <  5:69478/149‑1 (MQ=255)                                     ccGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGcctacgaacgccagcccaggcggccggattcggtggtcgtcgac                                                                                                         <  7:9597‑M1/141‑45 (MQ=255)                                     ccGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGcctacgaacgccagcccaggcggccggattcggtggtcgtcgac                                                                                                         >  8:9597‑M1/1‑97 (MQ=255)                                     ccGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTggg                                                                                                                              >  6:196864/1‑120 (MQ=255)                                     ccGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTggg                                                                                                                              <  5:196864/120‑1 (MQ=255)                                     ccGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCt                                                                                                 <  6:171753/149‑1 (MQ=255)                                     ccGCACATACGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGAGAAACTCCt                                                                                                 >  5:100857/1‑149 (MQ=255)                                           aTCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACCAACACCGAATCCGGCCGCCTGGGCTGGAGTTCGTAGGCGTCGCGAAACTCCTGATGCt                                                                                           >  5:234029/1‑149 (MQ=255)                                                    gtcgCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGaaa                                                                                   <  6:234029/148‑1 (MQ=255)                                                    gtcgCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAAt                                                                                  >  5:277079/1‑149 (MQ=255)                                                     tcgCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGCATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATc                                                                                 >  5:135040/1‑149 (MQ=255)                                                     tcgCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATc                                                                                 >  2:20003/1‑149 (MQ=255)                                                            ccgcGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAgcgc                                                                          >  7:24027/1‑149 (MQ=255)                                                                        gcagcaACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGcc                                                                                       <  6:72881/124‑1 (MQ=255)                                                                        gcagcaACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGcc                                                                                       >  5:72881/1‑124 (MQ=255)                                                                           gcaACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATg                                                           >  6:257366/1‑149 (MQ=255)                                                                               cagcagCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGt                                                         >  2:68822/1‑147 (MQ=255)                                                                               cagcagCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCa                                                       <  3:255508/149‑1 (MQ=255)                                                                                       tGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTc                                               <  6:277079/149‑1 (MQ=255)                                                                                          cGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCg                                            <  5:257366/149‑1 (MQ=255)                                                                                              cgcgGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCcttgatcttga                                                             >  3:33052/1‑128 (MQ=255)                                                                                              cgcgGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCcttgatcttga                                                             <  4:33052/128‑1 (MQ=255)                                                                                               gcgGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTg                                       >  8:196876/1‑149 (MQ=255)                                                                                                          gAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAg                            >  8:103920/1‑149 (MQ=255)                                                                                                             gtaggtGGTGTCGTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGtct                         >  7:114004/1‑149 (MQ=255)                                                                                                                   ggtgTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTg                   <  1:20003/149‑1 (MQ=255)                                                                                                                    gtgtCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTg                   <  1:64400/148‑1 (MQ=255)                                                                                                                    gtgtCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTg                   >  2:64400/1‑148 (MQ=255)                                                                                                                         cTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGc             >  1:53246/1‑149 (MQ=255)                                                                                                                         cTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGc             >  7:110922/1‑149 (MQ=255)                                                                                                                            cAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGcgtcgacctgaaggacaccacctacctcgacagctccgcgctcggcatgctgctgttgctgcgcgaccacgcgggcggcgacgagtcggatgtgcgggtagt          <  4:113432‑M2/149‑103 (MQ=255)                                                                                                                               gTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGcgtcgacctgaaggacaccacctacctcgacagctccgcgctcggcatgctgctgttgctgcgcgaccacgcgggcggcgacgagtcggatgtgcgg               <  7:9597‑M2/141‑98 (MQ=255)                                                                                                                               gTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGcgtcgacctgaaggacaccacctacctcgacagctccgcgctcggcatgctgctgttgctgcgcgaccacgcgggcggcgacgagtcggatgtgcgg               >  8:9597‑M2/1‑44 (MQ=255)                                                                                                                               gTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGa       <  6:135040/149‑1 (MQ=255)                                                                                                                                 cgacgaCCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGAtt     >  2:31708/1‑149 (MQ=255)                                                                                                                                  gACGcctacgaacgccagcccaggcggccggattcggtggtcgtcgacctgaaggacaccacctacctcgacagctccgcgctcggcatgctgctgttgctgcgcgaccacgcgggcggcgacgagtcggatgtgcgggtagtgcatgc    <  5:171753‑M1/149‑146 (MQ=255)                                                                                                                                    cgacCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAAAACCTGAAGATTGCCGAAAACGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAAACAGTCACGAATGCCATGCTAGCGATTccg  >  8:179604/1‑148 (MQ=255)                                                                                                                                     |                                                                                                                                                    GAGAATCTTGCGCACATCGGAGCTGGCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGATTCCT  >  NC_002947/4954479‑4954758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.