New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4954611	38 (0.900)	3 (0.070)	3/248	NT	7.8%	coding (135/306 nt)	PP_4364	anti‑sigma F factor antagonist
	?	NC_002947	= 4954648	34 (0.840)					coding (98/306 nt)	PP_4364	anti‑sigma F factor antagonist

GCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGATTCCTTCGATGATGGCGGATGCAACTG  >  NC_002947/4954504‑4954780                                                                                                                                                 |                                                                                                                                     gCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGcgtc                                                                                                                                  <  5:171753‑M2/149‑5 (MQ=255)        cTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAAc                                                                                                                           <  5:69478/149‑1 (MQ=255)            ccGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCt                                                                                                                       <  6:171753/149‑1 (MQ=255)            ccGCACATACGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGAGAAACTCCt                                                                                                                       >  5:100857/1‑149 (MQ=255)                  aTCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACCAACACCGAATCCGGCCGCCTGGGCTGGAGTTCGTAGGCGTCGCGAAACTCCTGATGCt                                                                                                                 >  5:234029/1‑149 (MQ=255)                           gtcgCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGaaa                                                                                                         <  6:234029/148‑1 (MQ=255)                           gtcgCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAAt                                                                                                        >  5:277079/1‑149 (MQ=255)                            tcgCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGCATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATc                                                                                                       >  5:135040/1‑149 (MQ=255)                            tcgCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATc                                                                                                       >  2:20003/1‑149 (MQ=255)                                   ccgcGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAgcgc                                                                                                >  7:24027/1‑149 (MQ=255)                                               gcagcaACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGcc                                                                                                             <  6:72881/124‑1 (MQ=255)                                               gcagcaACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGcc                                                                                                             >  5:72881/1‑124 (MQ=255)                                                  gcaACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATg                                                                                 >  6:257366/1‑149 (MQ=255)                                                      cagcagCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGt                                                                               >  2:68822/1‑147 (MQ=255)                                                      cagcagCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCa                                                                             <  3:255508/149‑1 (MQ=255)                                                              tGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTc                                                                     <  6:277079/149‑1 (MQ=255)                                                                 cGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCg                                                                  <  5:257366/149‑1 (MQ=255)                                                                     cgcgGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCcttgatcttga                                                                                   <  4:33052/128‑1 (MQ=255)                                                                     cgcgGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCcttgatcttga                                                                                   >  3:33052/1‑128 (MQ=255)                                                                      gcgGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTg                                                             >  8:196876/1‑149 (MQ=255)                                                                                 gAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAg                                                  >  8:103920/1‑149 (MQ=255)                                                                                    gtaggtGGTGTCGTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGtct                                               >  7:114004/1‑149 (MQ=255)                                                                                          ggtgTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTg                                         <  1:20003/149‑1 (MQ=255)                                                                                           gtgtCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTg                                         >  2:64400/1‑148 (MQ=255)                                                                                           gtgtCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTg                                         <  1:64400/148‑1 (MQ=255)                                                                                                cTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGc                                   >  7:110922/1‑149 (MQ=255)                                                                                                cTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGc                                   >  1:53246/1‑149 (MQ=255)                                                                                                   cAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGcgtcgacctgaaggacaccacctacctcgacagctccgcgctcggcatgctgctgttgctgcgcgaccacgcgggcggcgacgagtcggatgtgcgggtagt                                <  4:113432‑M2/149‑103 (MQ=255)                                                                                                      gTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGcgtcgacctgaaggacaccacctacctcgacagctccgcgctcggcatgctgctgttgctgcgcgaccacgcgggcggcgacgagtcggatgtgcgg                                     <  7:9597‑M2/141‑98 (MQ=255)                                                                                                      gTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGcgtcgacctgaaggacaccacctacctcgacagctccgcgctcggcatgctgctgttgctgcgcgaccacgcgggcggcgacgagtcggatgtgcgg                                     >  8:9597‑M2/1‑44 (MQ=255)                                                                                                      gTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGa                             <  6:135040/149‑1 (MQ=255)                                                                                                        cgacgaCCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGAtt                           >  2:31708/1‑149 (MQ=255)                                                                                                           cgacCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAAAACCTGAAGATTGCCGAAAACGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAAACAGTCACGAATGCCATGCTAGCGATTccg                        >  8:179604/1‑148 (MQ=255)                                                                                                               caccGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGATTCCTTCga                    <  7:103920/149‑1 (MQ=255)                                                                                                                 ccGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGATTCCTTCgat                   >  2:227986/1‑148 (MQ=255)                                                                                                                  cGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGATTCCTTCgatga                 <  7:196876/149‑1 (MQ=255)                                                                                                                         ggCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGATTCCTTCGATGATGGCGGa          <  1:68822/149‑1 (MQ=255)                                                                                                                                 gggCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGATTCCTTCGATGATGGCGGATGCAACTg  >  7:173309/1‑149 (MQ=255)                                                                                                                                                 gCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGATTCCTTCGATGATGGCGGATGCAAc    >  6:82939/1‑131 (MQ=255)                                                                                                                                                 gCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGATTCCTTCGATGATGGCGGATGCAAc    <  5:82939/131‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                     GCATGCACTACCCGCACATCCGACTCGTCGCCGCCCGCGTGGTCGCGCAGCAACAGCAGCATGCCGAGCGCGGAGCTGTCGAGGTAGGTGGTGTCCTTCAGGTCGACGACCACCGAATCCGGCCGCCTGGGCTGGCGTTCGTAGGCGTCGCGAAACTCCTGATGCTTGCCGAAATCGAAGCGCCCCTTGATCTTGATGGTCAGCTTTTTCCCGTCCTGCGAAAAATCAGTCTCGACTGCCATGCTAGCGATTCCTTCGATGATGGCGGATGCAACTG  >  NC_002947/4954504‑4954780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.