New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5161016 =	30 (0.710)	4 (0.100)	3/250	NT	13.5%	coding (39/1212 nt)	PP_4543	hypothetical protein
	?	NC_002947	5161043 =	22 (0.540)					coding (12/1212 nt)	PP_4543	hypothetical protein

AAGGGCCTGAATAGACAGGTTCTAGGGTTCCGGAAAACAGGCGCAAGTATTGCGGGGGCCAATGACAGATTAATGTCTGATTAGTGGCACTGTTGTTAAGTAATTGAGTATTGAAGGACCCACCCGGCGTTCGTCATTTGAGCGACGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5161164‑5161016 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCTTT  >  NC_002947/5161043‑5161165                                                                                                                                                                                                                                                                                  AAGGGCCTGAATAGACAGGTTCTAGGGTTCCGGAAAACAGGCGCAAGTATTGCGGGGGCCAATGACAGATTAATGTCTGATTAGTGGCACTGTTGTTAAGTAATTGAGTATTGAAGGACCCACCCGGCGTTCGTCATTTGAGCGACGGG                                                                                                                             >  4:41269/1‑149                                                                                                       ATTGAGTATTGAAGGACCCACCCGGCGTTCGTCATTTGAGCGACGGGTGGGTCCTTCAATACTCAATTACTTTACAACAGTGGCACTAATCAGACATTAATCTGTGATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGTACCCTAG                        >  3:70956/1‑148                                                                                                                            CCGGCGTTCGTCATTTGAGCGACGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCTTT  >  2:199508/1‑149                                                                                                                            CCGGCGTTCGTCATTTGAGCGACGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCAC                                                                                      <  5:133725/65‑1                                                                                                                            CCGGCGTTCGTCATTTGAGCGACGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCAC                                                                                      >  6:133725/1‑65                                                                                                                                                                                                                                                                                  AAGGGCCTGAATAGACAGGTTCTAGGGTTCCGGAAAACAGGCGCAAGTATTGCGGGGGCCAATGACAGATTAATGTCTGATTAGTGGCACTGTTGTTAAGTAATTGAGTATTGAAGGACCCACCCGGCGTTCGTCATTTGAGCGACGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5161164‑5161016 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCTTT  >  NC_002947/5161043‑5161165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.