New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5161016 =	30 (0.710)	4 (0.100)	3/250	NT	13.5%	coding (39/1212 nt)	PP_4543	hypothetical protein
	?	NC_002947	5161043 =	22 (0.540)					coding (12/1212 nt)	PP_4543	hypothetical protein

AGAAAAGCATGGCGCAGGAAGGGTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCTT  >  NC_002947/5160870‑5161164                                                                                                                                                   |                                                                                                                                                     agaAAAGCATGGCGCAGGAAGGGTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGc                                                                                                                                                      <  3:13075/147‑1 (MQ=255)        cATGGCGCAGGAAGGGTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCt                                                                                                                                              >  6:5696/1‑148 (MQ=255)         aTGGCGCAGGAAGGGTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTc                                                                                                                                             >  3:224133/1‑148 (MQ=255)            gcgcAGGAAGGGTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCaaa                                                                                                                                          <  4:40817/148‑1 (MQ=255)               cAGGAAGGGTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGTCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGAc                                                                                                                                      <  7:246969/149‑1 (MQ=255)                  gAAGGGTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCt                                                                                                                                              <  8:108252/138‑1 (MQ=255)                  gAAGGGTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCt                                                                                                                                              >  7:108252/1‑138 (MQ=255)                    aGGGTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTTGGCAAGGCTGTGCAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAATGAAGGCCCGTCGCTCAAATGACGAAc                                                                                                                                  <  8:24692/148‑1 (MQ=255)                       gTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGa                                                                                                                                       >  3:242089/1‑140 (MQ=255)                       gTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGa                                                                                                                                       <  4:242089/140‑1 (MQ=255)                        ttGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCgg                                                                                                                             <  5:5696/149‑1 (MQ=255)                        aaagggcctgaatagacaggttctagggttccggaaaacaggcgcaagtattgcgggggccaatgacagattaatgtctgattagtggcactgttgttaagtaattgagtattgaaggacccaCCCGTCGCTCAAATGACGAACGCCgg                                                                                                                             >  2:199508‑M1/124‑149 (MQ=255)                           gCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCgggt                                                                                                                           <  4:15491/148‑1 (MQ=255)                                   gCACAAGGTCATCCCAGGTGGCCGTCGAACGATCACGAAGGTTGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCACCAAGTAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCtt                                                                                                                   <  6:145526/148‑1 (MQ=255)                                            cATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTc                                                                                                           <  3:84944/147‑1 (MQ=255)                                            cATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTc                                                                                                           >  4:84944/1‑147 (MQ=255)                                              ctagggtaccggaaaacaggcgcaagtattgcgggggccaatcacagattaatgtctgattagtgccactgttgtaaagtaattgagtattgaaggacccaCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAAt                                                                                                        >  3:70956‑M1/102‑148 (MQ=255)                                                       gCCTTCGAAAGATCACGGAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCGCAAGGAAGGCCCGTCGCTCAAATGACGATCGCCGGGTTTGTCCTTCAATACTCAATTACTTaacaa                                                                                              <  2:44520/149‑1 (MQ=255)                                                                       gCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAAt                                                                                 >  1:64109/1‑146 (MQ=255)                                                                                                 gTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGc                                                     <  2:64109/148‑1 (MQ=255)                                                                                                   cACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGAc                                                                                                                                      >  5:26558/1‑65 (MQ=255)                                                                                                   cACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGAc                                                                                                                                      >  5:26560/1‑65 (MQ=255)                                                                                                   cACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGAc                                                                                                                                      <  6:26558/65‑1 (MQ=255)                                                                                                         ttCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTg                                             <  6:56552/148‑1 (MQ=255)                                                                                                            gtggcactgttgttaagtaattgagtattgaaggacccaCCCGTCGCTCAAATGACGAACGCCgg                                                                                                                             <  5:133725‑M1/26‑1 (MQ=255)                                                                                                            gtggcactgttgttaagtaattgagtattgaaggacccaCCCGTCGCTCAAATGACGAACGCCgg                                                                                                                             >  6:133725‑M1/40‑65 (MQ=255)                                                                                                            ggctatcTGGCTGAAGACCGTATCTATCCCCAAGGAACGCCCGTCGCGCTAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTgcgc                                          <  8:79590/142‑1 (MQ=255)                                                                                                                              cGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTAGGTACTTCAATACTCAATTACTTAACAACAGTGCAACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAAccc                          >  1:199475/1‑146 (MQ=255)                                                                                                                                      tCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTCCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTc               >  1:139143/1‑149 (MQ=255)                                                                                                                                       ccccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTc               >  2:199989/1‑148 (MQ=255)                                                                                                                                         ccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTcc                                 <  5:27234/128‑1 (MQ=255)                                                                                                                                         ccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTcc                                 >  6:27234/1‑128 (MQ=255)                                                                                                                                         ccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGt                >  6:228766/1‑145 (MQ=255)                                                                                                                                         ccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGt                <  5:228766/145‑1 (MQ=255)                                                                                                                                         ccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTAt            >  3:41269/1‑149 (MQ=255)                                                                                                                                              gaaggCCTGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAgg       >  2:162918/1‑149 (MQ=255)                                                                                                                                              gaaggCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAgg       >  8:36774/1‑149 (MQ=255)                                                                                                                                                   CCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCtt  >  4:41269‑M1/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     AGAAAAGCATGGCGCAGGAAGGGTTGGCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCTT  >  NC_002947/5160870‑5161164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.