New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5161016 =	30 (0.710)	4 (0.100)	3/250	NT	13.5%	coding (39/1212 nt)	PP_4543	hypothetical protein
	?	NC_002947	5161043 =	22 (0.540)					coding (12/1212 nt)	PP_4543	hypothetical protein

GCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCTTTCCGAAGACA  >  NC_002947/5160896‑5161174                                                                                                                                                    |                                                                                                                                    gCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCgggt                                                                                                                                     <  4:15491/148‑1 (MQ=255)         gCACAAGGTCATCCCAGGTGGCCGTCGAACGATCACGAAGGTTGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCACCAAGTAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCtt                                                                                                                             <  6:145526/148‑1 (MQ=255)                  cATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTc                                                                                                                     >  4:84944/1‑147 (MQ=255)                  cATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTc                                                                                                                     <  3:84944/147‑1 (MQ=255)                    ctagggtaccggaaaacaggcgcaagtattgcgggggccaatcacagattaatgtctgattagtgccactgttgtaaagtaattgagtattgaaggacccaCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAAt                                                                                                                  >  3:70956‑M1/102‑148 (MQ=255)                             gCCTTCGAAAGATCACGGAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCGCAAGGAAGGCCCGTCGCTCAAATGACGATCGCCGGGTTTGTCCTTCAATACTCAATTACTTaacaa                                                                                                        <  2:44520/149‑1 (MQ=255)                                             gCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAAt                                                                                           >  1:64109/1‑146 (MQ=255)                                                                       gTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGc                                                               <  2:64109/148‑1 (MQ=255)                                                                               ttCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTg                                                       <  6:56552/148‑1 (MQ=255)                                                                                  ggctatcTGGCTGAAGACCGTATCTATCCCCAAGGAACGCCCGTCGCGCTAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTgcgc                                                    <  8:79590/142‑1 (MQ=255)                                                                                                    cGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTAGGTACTTCAATACTCAATTACTTAACAACAGTGCAACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAAccc                                    >  1:199475/1‑146 (MQ=255)                                                                                                     attgagtattgaaggacccacccggcgttcgtcatttgagcgacgggTGGGTCCTTCAATACTCAATTACTTTACAACAGTGGCACTAATCAGACATTAATCTGTGATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGTACCCTAg                                 >  3:70956‑M2/48‑148 (MQ=255)                                                                                                            tCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTCCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTc                         >  1:139143/1‑149 (MQ=255)                                                                                                             ccccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTc                         >  2:199989/1‑148 (MQ=255)                                                                                                               ccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTcc                                           <  5:27234/128‑1 (MQ=255)                                                                                                               ccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTcc                                           >  6:27234/1‑128 (MQ=255)                                                                                                               ccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGt                          <  5:228766/145‑1 (MQ=255)                                                                                                               ccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGt                          >  6:228766/1‑145 (MQ=255)                                                                                                               ccAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTAt                      >  3:41269/1‑149 (MQ=255)                                                                                                                    gaaggCCTGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAgg                 >  2:162918/1‑149 (MQ=255)                                                                                                                    gaaggCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAgg                 >  8:36774/1‑149 (MQ=255)                                                                                                                         CCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCtt            >  4:41269‑M1/1‑149 (MQ=255)                                                                                                                          ccggcgttcgtcatttgagcgacgggTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCAc                                                                                               <  5:133725‑M2/39‑1 (MQ=255)                                                                                                                          ccggcgttcgtcatttgagcgacgggTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCAc                                                                                               >  6:133725‑M2/27‑65 (MQ=255)                                                                                                                          ccggcgttcgtcatttgagcgacgggTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCttt           >  2:199508‑M2/27‑149 (MQ=255)                                                                                                                               gCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCTTTCCGaa      <  8:68726/149‑1 (MQ=255)                                                                                                                                 tCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCTTTCCGaa      >  4:77839/1‑147 (MQ=255)                                                                                                                                 tCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCTTTCCGaa      <  3:77839/147‑1 (MQ=255)                                                                                                                                   aaaTGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTTTCATTGGACCCCTCAATACTTGCTCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCTTTCCGAAGACa  >  2:221770/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                    GCCGGCTGGCACAAGGGCATCCCAGGTGGCCGTCGAAAGATCACGCAGGTGGGCAAGGCTGTACAGGCTGGTCACGTTTTCGGCTCGCTGTCTGAAGACCGTCAGTATCCCCAAGGAAGGCCCGTCGCTCAAATGACGAACGCCGGGTGGGTCCTTCAATACTCAATTACTTAACAACAGTGCCACTAATCAGACATTAATCTGTCATTGGCCCCCGCAATACTTGCGCCTGTTTTCCGGAACCCTAGAACCTGTCTATTCAGGCCCTTTCCGAAGACA  >  NC_002947/5160896‑5161174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.