New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5205100	40 (0.950)	3 (0.080)	3/244	NT	6.7%	coding (462/471 nt)	PP_4585	TrmH family RNA methyltransferase
	?	NC_002947	= 5205127	46 (1.150)					intergenic (+18/+97)	PP_4585/PP_4586	TrmH family RNA methyltransferase/hypothetical protein

GCCAGAGGACGGCTCGTTGAGCGAAGACGTGCGGGGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5204947‑5205100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaagCTTCGCCGCACGGCCTTGTTATTTGAACTTGGGCCCTGAGCGGGTATTCAGCCCTTTGGCCATGCGGTCATACAACACCACATTCACCGTCGCCGCCAGGTTCATGCAGCCCTCGGTCGGGATGTAGATAGTCTCTTCACACCATC  <  NC_002947/5205127‑5204982                                                                                                                                                                                                                                                                                                              GCCAGAGGACGGCTCGTTGAGCGAAGACGTGCGGGGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGC                                                                                                                                                         >  4:89664/1‑149   CAGAGGACGGCTCGTTGAGCGAAGACGTGCGGGGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCC                                                                                                                                                       <  3:89664/149‑1                                        GTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGCTTCGCCGCACGGCCTTGTTATTTGAACTTGGGC                                                                                                                  <  4:98965/149‑1                                         TGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGCTTCGCCGCACGGCCTTGTTATTTGAACTTGGGCC                                                                                                                 >  7:165148/1‑149                                         TGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGCTTCGCCGCACGGCCTTGTTATTTGAACTTGGGCC                                                                                                                 <  8:165148/149‑1                                                                                                                                                     CCCAAGCTTCGCCGCACGGCCTTGTTATTTGAACTTGGGCCCTGAGCGGGTATTCAGCCCTTTGGCCATGCGGTCATACAACACCACATTCACCGTCGCCGCCAGGTTCATGCAGCCCTCGGTCGGGATGTAGATAGTCTCTTCCCAC      >  4:142317/1‑148                                                                                                                                                      CCAAGCTTCGCCGCACGGCCTTGTTATTTGAACTTGGGCCCTGAGCGGGTATTCAGCCCTTTGGCCATGCGGTCATACAACACCACATTCACCGTCGCCGCCAGGTTCATGCA                                        <  5:36162/113‑1                                                                                                                                                      CCAAGCTTCGCCGCACGGCCTTGTTATTTGAACTTGGGCCCTGAGCGGGTATTCAGCCCTTTGGCCATGCGGTCATACAACACCACATTCACCGTCGCCGCCAGGTTCATGCA                                        >  6:36162/1‑113                                                                                                                                                        AAGCTTCGCCGCACGGCCTTGTTATTTGAACTTGGGCCCTGAGCGGGTATTCAGCCCTTTGGCCATGCGGTCATACAACACCACATTCACCGTCGCCGCCAGGTTCATGCAGCCCTCGGTCGGGATGTAGATAGTCTCTTCCCACCATC  >  2:213195/1‑149                                                                                                                                                        AAGCTTCGCCGCACGGCCTTGTTATTTGAACTTGGGCCCTGAGCGGGTATTCAGCCCTTTGGCCATGCGGTCATACAACACCACATTCACCGTCGCCGCCAGGTTCATGCAGCCCTCGGTCGGGATGTAGATAGTCTCTTCACACCATC  >  1:34943/1‑149                                                                                                                                                                                                                                                                                                              GCCAGAGGACGGCTCGTTGAGCGAAGACGTGCGGGGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5204947‑5205100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaagCTTCGCCGCACGGCCTTGTTATTTGAACTTGGGCCCTGAGCGGGTATTCAGCCCTTTGGCCATGCGGTCATACAACACCACATTCACCGTCGCCGCCAGGTTCATGCAGCCCTCGGTCGGGATGTAGATAGTCTCTTCACACCATC  <  NC_002947/5205127‑5204982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.