New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5205100	40 (0.950)	3 (0.080)	3/244	NT	6.7%	coding (462/471 nt)	PP_4585	TrmH family RNA methyltransferase
	?	NC_002947	= 5205127	46 (1.150)					intergenic (+18/+97)	PP_4585/PP_4586	TrmH family RNA methyltransferase/hypothetical protein

GATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACG  >  NC_002947/5204982‑5205272                                                                                                                                                  |                                                                                                                                                  gATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGctt                                                                                                                                                >  1:34943‑M2/1‑146 (MQ=255) gATGGTGGGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGctt                                                                                                                                                >  2:213195‑M2/1‑146 (MQ=255)     gtggGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttggg                                                                                                                                             >  4:142317‑M2/1‑142 (MQ=255)         gAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGt                                                                                                                                         >  5:131183/1‑148 (MQ=255)            gagaCTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCaaa                                                                                                                                     <  8:201857/149‑1 (MQ=255)               aCTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGc                                                                                                                                  >  6:213627/1‑149 (MQ=255)               aCTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGc                                                                                                                                  >  5:95708/1‑149 (MQ=255)                 tATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGATCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCg                                                                                                                                >  7:155718/1‑149 (MQ=255)                   tCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCgg                                                                                                                               <  6:95708/148‑1 (MQ=255)                       cATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCggg                                                                                                                              <  2:193276/145‑1 (MQ=255)                       cATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGa                                                                                                                             <  6:131183/146‑1 (MQ=255)                                  aGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGAt                                                                                                               >  2:175777/1‑149 (MQ=255)                                       tGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttgg                                                                                                                                              >  6:36162‑M2/1‑108 (MQ=255)                                       tGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttgg                                                                                                                                              <  5:36162‑M2/113‑6 (MQ=255)                                         cATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTgg                                                                                                        <  7:246715/149‑1 (MQ=255)                                         cATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGAGGCGAAGCTTGGGCTGTCaaa                                                                                                                                     >  8:170090/1‑120 (MQ=255)                                          aTGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTggg                                                                                                       <  1:175777/149‑1 (MQ=255)                                             aaCCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCt                                                                                                    >  6:58214/1‑149 (MQ=255)                                                     ggcgACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGaaa                                                                                            <  5:58214/149‑1 (MQ=255)                                                                 tgtgGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTg                                                                                     >  8:104457/1‑144 (MQ=255)                                                                 tgtgGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTg                                                                                     <  7:104457/144‑1 (MQ=255)                                                                     gtgtTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAg                                                                                                                   <  8:145035/110‑1 (MQ=255)                                                                     gtgtTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAg                                                                                                                   >  7:145035/1‑110 (MQ=255)                                                                       gttgtATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGt                                                                           >  7:234778/1‑148 (MQ=255)                                                                          gtATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCtt                                                                                      <  1:137568/134‑1 (MQ=255)                                                                          gtATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCtt                                                                                      >  2:137568/1‑134 (MQ=255)                                                                            aTGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGa                                                                               <  8:196901/139‑1 (MQ=255)                                                                            aTGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGa                                                                               >  7:196901/1‑139 (MQ=255)                                                                                  gCATGGCCAAAGGGCTGAATACCCGCTCAGGACCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCtt                                                               >  7:159611/1‑149 (MQ=255)                                                                                   cATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCttt                                                              >  2:122931/1‑149 (MQ=255)                                                                                                 tGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCt                                                  >  7:247734/1‑147 (MQ=255)                                                                                                   aaTACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAGGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGt                                              <  1:31610/149‑1 (MQ=255)                                                                                                   aaTACCCGCTCAGGGCCCAAGTGCAAATAACCAGGCCGGGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTa                                                <  8:247734/147‑1 (MQ=255)                                                                                                    aTACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGt                                              <  8:234778/148‑1 (MQ=255)                                                                                                     aaCCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGc                                            <  7:95107/148‑1 (MQ=255)                                                                                                      aCCCGCTCAGGGCCCAAGTTCAAATAACAAGGACGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGc                                            >  2:69481/1‑148 (MQ=255)                                                                                                                ggCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttgggccctgagcgggtattcagccctttggccatgcggtcatacaacaccacattcaccgtcgccgccaggttcatgcagccctcggtcgggatgtagatagtctcttcaca                                 <  8:165148‑M2/149‑115 (MQ=255)                                                                                                                ggCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttgggccctgagcgggtattcagccctttggccatgcggtcatacaacaccacattcaccgtcgccgccaggttcatgcagccctcggtcgggatgtagatagtctcttcaca                                 >  7:165148‑M2/1‑35 (MQ=255)                                                                                                                ggCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGct                                 >  2:244313/1‑149 (MQ=255)                                                                                                                 gCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttgggccctgagcgggtattcagccctttggccatgcggtcatacaacaccacattcaccgtcgccgccaggttcatgcagccctcggtcgggatgtagatagtctcttcacac                                <  4:98965‑M2/149‑116 (MQ=255)                                                                                                                   ccAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTAt                                                                                                <  4:201976/83‑1 (MQ=255)                                                                                                                   ccAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTAt                                                                                                >  3:201976/1‑83 (MQ=255)                                                                                                                   ccAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTg                              <  1:244313/149‑1 (MQ=255)                                                                                                                   ccAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTg                              <  8:159611/149‑1 (MQ=255)                                                                                                                       gTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTg                                                                                     <  2:227136/90‑1 (MQ=255)                                                                                                                       gTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTg                                                                                     >  1:227136/1‑90 (MQ=255)                                                                                                                       gTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTgcag                           >  5:11418/1‑148 (MQ=255)                                                                                                                           aaaTAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACAt                      >  2:31946/1‑149 (MQ=255)                                                                                                                            aaTAACAATGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGACAGGTATGCCTTGGGACTGTATGAAAATCCTTGAGACGAAGGTCATGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATc                     <  8:155718/149‑1 (MQ=255)                                                                                                                             aTAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATcc                    <  5:127621/149‑1 (MQ=255)                                                                                                                             aTAACAAGGCCCTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATcc                    >  8:245550/1‑149 (MQ=255)                                                                                                                                 cAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTgca                            <  3:193045/137‑1 (MQ=255)                                                                                                                                 cAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTgca                            >  4:193045/1‑137 (MQ=255)                                                                                                                                             gcgAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGccccctgc    >  4:67165/1‑145 (MQ=255)                                                                                                                                             gcgAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTGTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCa    >  8:192598/1‑149 (MQ=255)                                                                                                                                               gAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGTCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTCCACAACCATGCTCTGGAGCACATCCGAACGCCGCCcccgcccg  >  5:63204/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACG  >  NC_002947/5204982‑5205272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.