| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5205100 | 40 (0.950) | 3 (0.080) | 3/244 | NT | 6.7% | coding (462/471 nt) | PP_4585 | TrmH family RNA methyltransferase |
| ? | NC_002947 | = 5205127 | 46 (1.150) | intergenic (+18/+97) | PP_4585/PP_4586 | TrmH family RNA methyltransferase/hypothetical protein | |||||
GCTCGTTGAGCGAAGACGTGCGGGGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAG > NC_002947/5204958‑5205247 | gCTCGTTGAGCGAAGACGTGCGGGGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCaaa < 4:77797/149‑1 (MQ=255) cTCGTTGAGCGAAGACGTGCGGTGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACTGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTTAATACCCGCTCAGGGCCCAAGTTCAAAt < 2:73584/149‑1 (MQ=255) gTTGAGCGAAGACGTGCGGGGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATaa > 6:127621/1‑148 (MQ=255) gTTGAGCGAAGACGTGCGGGGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAAc < 4:158425/149‑1 (MQ=255) tGAGCGAAGACGTGCGGGGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAAc > 8:246715/1‑147 (MQ=255) tGCGGGGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACACGCTCAGGGCCCATGTTCAAATAACAAGGCCGTgcggc > 8:95107/1‑148 (MQ=255) gggATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGcc > 6:6414/1‑137 (MQ=255) gggATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGcc < 5:6414/137‑1 (MQ=255) gATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGctt > 1:34943‑M2/1‑146 (MQ=255) gATGGTGGGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGctt > 2:213195‑M2/1‑146 (MQ=255) gtgtGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGcttcgccgcacggccttgttatttgaacttgggc < 4:98965‑M1/149‑35 (MQ=255) gtggGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttggg > 4:142317‑M2/1‑142 (MQ=255) tgtgAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGcttcgccgcacggccttgttatttgaacttgggcc < 8:165148‑M1/149‑36 (MQ=255) tgtgAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGcttcgccgcacggccttgttatttgaacttgggcc > 7:165148‑M1/1‑114 (MQ=255) gAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGt > 5:131183/1‑148 (MQ=255) gagaCTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCaaa < 8:201857/149‑1 (MQ=255) aCTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGc > 6:213627/1‑149 (MQ=255) aCTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGc > 5:95708/1‑149 (MQ=255) tATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGATCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCg > 7:155718/1‑149 (MQ=255) tCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCgg < 6:95708/148‑1 (MQ=255) cATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCggg < 2:193276/145‑1 (MQ=255) cATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGa < 6:131183/146‑1 (MQ=255) aGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGAt > 2:175777/1‑149 (MQ=255) tGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttgg > 6:36162‑M2/1‑108 (MQ=255) tGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttgg < 5:36162‑M2/113‑6 (MQ=255) gCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGtt < 2:156717/82‑1 (MQ=255) cATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTgg < 7:246715/149‑1 (MQ=255) cATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGAGGCGAAGCTTGGGCTGTCaaa > 8:170090/1‑120 (MQ=255) aTGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTggg < 1:175777/149‑1 (MQ=255) aaCCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCt > 6:58214/1‑149 (MQ=255) ggcgACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGaaa < 5:58214/149‑1 (MQ=255) tgtgGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTg < 7:104457/144‑1 (MQ=255) tgtgGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTg > 8:104457/1‑144 (MQ=255) gtgtTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAg > 7:145035/1‑110 (MQ=255) gtgtTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAg < 8:145035/110‑1 (MQ=255) gttgtATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGt > 7:234778/1‑148 (MQ=255) gtATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCtt < 1:137568/134‑1 (MQ=255) gtATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCtt > 2:137568/1‑134 (MQ=255) aTGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGa < 8:196901/139‑1 (MQ=255) aTGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGa > 7:196901/1‑139 (MQ=255) gCATGGCCAAAGGGCTGAATACCCGCTCAGGACCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCtt > 7:159611/1‑149 (MQ=255) cATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCttt > 2:122931/1‑149 (MQ=255) tGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCt > 7:247734/1‑147 (MQ=255) aaTACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAGGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGt < 1:31610/149‑1 (MQ=255) aaTACCCGCTCAGGGCCCAAGTGCAAATAACCAGGCCGGGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTa < 8:247734/147‑1 (MQ=255) aTACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGt < 8:234778/148‑1 (MQ=255) aaCCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGc < 7:95107/148‑1 (MQ=255) aCCCGCTCAGGGCCCAAGTTCAAATAACAAGGACGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGc > 2:69481/1‑148 (MQ=255) ggCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttgggccctgagcgggtattcagccctttggccatgcggtcatacaacaccacattcaccgtcgccgccaggttcatgcagccctcggtcgggatgtagatagtctcttcaca < 8:165148‑M2/149‑115 (MQ=255) ggCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttgggccctgagcgggtattcagccctttggccatgcggtcatacaacaccacattcaccgtcgccgccaggttcatgcagccctcggtcgggatgtagatagtctcttcaca > 7:165148‑M2/1‑35 (MQ=255) ggCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGct > 2:244313/1‑149 (MQ=255) gCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGcttgggccctgagcgggtattcagccctttggccatgcggtcatacaacaccacattcaccgtcgccgccaggttcatgcagccctcggtcgggatgtagatagtctcttcacac < 4:98965‑M2/149‑116 (MQ=255) cccAAGcttcgccgcacggccttgttatttgaacttgggccctgagcgggtattcagccctttggccatgcggtcatacaacaccacattcaccgtcgccgccaggttcatgcagccctcggtcgggatgtagatagtctcttcccac > 4:142317‑M1/1‑6 (MQ=255) ccAAGcttcgccgcacggccttgttatttgaacttgggccctgagcgggtattcagccctttggccatgcggtcatacaacaccacattcaccgtcgccgccaggttcatgca > 6:36162‑M1/1‑5 (MQ=255) ccAAGcttcgccgcacggccttgttatttgaacttgggccctgagcgggtattcagccctttggccatgcggtcatacaacaccacattcaccgtcgccgccaggttcatgca < 5:36162‑M1/113‑109 (MQ=255) ccAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTAt < 4:201976/83‑1 (MQ=255) ccAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTAt > 3:201976/1‑83 (MQ=255) ccAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTg < 8:159611/149‑1 (MQ=255) ccAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTg < 1:244313/149‑1 (MQ=255) aaGcttcgccgcacggccttgttatttgaacttgggccctgagcgggtattcagccctttggccatgcggtcatacaacaccacattcaccgtcgccgccaggttcatgcagccctcggtcgggatgtagatagtctcttcccaccatc > 2:213195‑M1/1‑3 (MQ=255) aaGcttcgccgcacggccttgttatttgaacttgggccctgagcgggtattcagccctttggccatgcggtcatacaacaccacattcaccgtcgccgccaggttcatgcagccctcggtcgggatgtagatagtctcttcacaccatc > 1:34943‑M1/1‑3 (MQ=255) gTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTg < 2:227136/90‑1 (MQ=255) gTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTg > 1:227136/1‑90 (MQ=255) gTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTgcag > 5:11418/1‑148 (MQ=255) | GCTCGTTGAGCGAAGACGTGCGGGGATGGTGTGAAGAGACTATCTACATCCCGACCGAGGGCTGCATGAACCTGGCGGCGACGGTGAATGTGGTGTTGTATGACCGCATGGCCAAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAG > NC_002947/5204958‑5205247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |