New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5318553 =	38 (0.900)	3 (0.080)	3/242	NT	7.5%	coding (821/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase
	?	NC_002947	5318611 =	38 (0.960)					coding (763/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase

TCCGAAGCCCTGACTGAAATCGCCAAGTCGCTGAACCTGCCGGTCACCAATACCCTGATGGGGTTGGGTGGCTTCCCGGGTACCGACCGCCAGTTCCTCGGCATGCTCGGCATGCATGGCAGCTACACCGCCAACATGGCCATGCATCATGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5318707‑5318553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgccgaGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGG  >  NC_002947/5318611‑5318700                                                                                                                                                                                                                                                       TCCGAAGCCCTGACTGAAATCGCCAAGTCGCTGAACCTGCCGGTCACCAATACACTGATGGGGTTGGGTGGCTTCACGGGTACAGACCGCCAGTTCATCGGCATGCTCGGCATGCATGGCAGCTACACCGCCAACATGGCCATGCATCA                                                                                                  >  8:73153/1‑149                                                                                                 CTCGGCATGCTCGGCATGCATGGCAGCTACACCGCCAACATGGCCATGCATCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGG  >  7:205923/1‑149                                                                                                     GCATGCTCGGCATGCATGGCAGCTACACCGCCAACATGGCCATGCATCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCA         >  1:247091/1‑138                                                                                                     GCATGCTCGGCATGCATGGCAGCTACACCGCCAACATGGCCATGCATCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCA         <  2:247091/138‑1                                                                                                                                                                                                                                                       TCCGAAGCCCTGACTGAAATCGCCAAGTCGCTGAACCTGCCGGTCACCAATACCCTGATGGGGTTGGGTGGCTTCCCGGGTACCGACCGCCAGTTCCTCGGCATGCTCGGCATGCATGGCAGCTACACCGCCAACATGGCCATGCATCATGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5318707‑5318553 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgccgaGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGG  >  NC_002947/5318611‑5318700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.