New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5318553 =	38 (0.900)	3 (0.080)	3/242	NT	7.5%	coding (821/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase
	?	NC_002947	5318611 =	38 (0.960)					coding (763/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase

TCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCACCGCCGAGGATCACACCGCCACCGGAGTAGACGACCG  >  NC_002947/5318463‑5318748                                                                                                                                                      |                                                                                                                                          ccctgactgaaatcgccaagtcgctgaacctgccggtcaccaataccctgatggggttgggtggcttcccgggtaccgaccgccagttccTC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGcatgccgagcatgccgag                                                                                                                                           >  7:205923‑M1/91‑149 (MQ=255)        gAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTgg                                                                                                                                    >  5:219304/1‑149 (MQ=255)         aaTGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGc                                                                                                                                   >  1:46200/1‑149 (MQ=255)                           gCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGc                                                                                                                 >  8:181660/1‑149 (MQ=255)                           gCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGc                                                                                                                 <  3:156741/149‑1 (MQ=255)                             aGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCa                                                                                                               >  2:92049/1‑149 (MQ=255)                                  ttGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCaa                                                                                                          >  6:101104/1‑149 (MQ=255)                                    ggccgggccgTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAAc                                                                                                         <  7:164516/148‑1 (MQ=255)                                     gccgggccgTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATCGGGGATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAAcc                                                                                                        >  1:77211/1‑149 (MQ=255)                                       cgggccgTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGcatgccgagcatgccgag                                                                                                                                           <  7:42412/111‑1 (MQ=255)                                       cgggccgTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGcatgccgagcatgccgag                                                                                                                                           >  8:42412/1‑111 (MQ=255)                                             gTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAggg                                                                                               >  8:64757/1‑149 (MQ=255)                                               ttACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCa                                                                                                  <  3:59954/144‑1 (MQ=255)                                               ttACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCa                                                                                                  >  4:59954/1‑144 (MQ=255)                                                       tgggcgtcgAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTAcc                                                                                                                         <  2:43810/109‑1 (MQ=255)                                                       tgggcgtcgAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTAcc                                                                                                                         >  1:43810/5‑113 (MQ=255)                                                       cgGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGAc                                                                                     <  4:223116/149‑1 (MQ=255)                                                         gtcgtcGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCg                                                                                   >  4:36919/1‑149 (MQ=255)                                                          tcgtcgAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCgg                                                                                  >  4:172477/1‑149 (MQ=255)                                                             tcgAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAg                                                                               <  2:46200/149‑1 (MQ=255)                                                                aaaCGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGtt                                                                            <  2:77211/149‑1 (MQ=255)                                                                   cgcgCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAg                                                                         <  6:219304/149‑1 (MQ=255)                                                                    gcgcACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTg                                                                                          >  7:138921/1‑131 (MQ=255)                                                                    gcgcACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTg                                                                                          <  8:138921/131‑1 (MQ=255)                                                                      gcACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGa                                                                      <  5:101104/149‑1 (MQ=255)                                                                             cGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCg                                                               <  7:47243/149‑1 (MQ=255)                                                                                         cATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAgg                                                   <  7:64757/149‑1 (MQ=255)                                                                                           ctcggcatgctcggcatgcatggcagctacaccgccaacatggccatgcatcatgccgaGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAggg                                                  >  7:205923‑M2/60‑149 (MQ=255)                                                                                               gcatgctcggcatgcatggcagctacaccgccaacatggccatgcatcatgccgaGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTtca                                                         >  1:247091‑M2/56‑138 (MQ=255)                                                                                               gcatgctcggcatgcatggcagctacaccgccaacatggccatgcatcatgccgaGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTtca                                                         <  2:247091‑M2/83‑1 (MQ=255)                                                                                                  TGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGATGAACTGGCGGTCTGTACCCGTGAAGCCACCCAACCCCATCAGTGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGa                                           >  8:73153‑M1/1‑149 (MQ=255)                                                                                                       cATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGc                                         <  6:232842/146‑1 (MQ=255)                                                                                                       cATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGc                                         >  5:232842/1‑146 (MQ=255)                                                                                                          ggCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTtcagtcag                                                    <  8:116441/132‑1 (MQ=255)                                                                                                          ggCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTtcagtcag                                                    >  7:116441/1‑132 (MQ=255)                                                                                                            ccATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCAccgcc                                  >  3:76055/1‑148 (MQ=255)                                                                                                              aTGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCACCGCCGAg                               <  3:172477/149‑1 (MQ=255)                                                                                                               tGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCACCGCCGAgg                              <  7:181660/149‑1 (MQ=255)                                                                                                               tGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCACCGCCGAgg                              <  3:36919/149‑1 (MQ=255)                                                                                                                                  atgcatgcCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCACCGCCGAGGAt                            <  5:115530/132‑1 (MQ=255)                                                                                                                                  atgcatgcCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCACCGCCGAGGAt                            >  6:115530/1‑132 (MQ=255)                                                                                                                                  atgcatgcCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCACCGCCGAGGATCACACCGCCACCGGAGt           <  1:92049/149‑1 (MQ=255)                                                                                                                                   tgcatgcCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCg                                                                                   >  4:242439/1‑76 (MQ=255)                                                                                                                                   tgcatgcCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCg                                                                                   <  3:242439/76‑1 (MQ=255)                                                                                                                                        gccgagcatgccgagGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCACCGCCGAGGATCACACCGCCACCGGAGTAgacga     >  1:200890/1‑149 (MQ=255)                                                                                                                                         ccgagcatgccgagGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCACCGCCGAGGATCACACCGCCACCGGAGTAgacgac    <  4:76055/149‑1 (MQ=255)                                                                                                                                           gagcatgccgagGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCACCGCCGAGGATCACACCGCCACCGGAGTAGACGACCg  >  7:42530/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                          TCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGGGCTTCGGAGCCACCGCCGAGGATCACACCGCCACCGGAGTAGACGACCG  >  NC_002947/5318463‑5318748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.