New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5318553 =	38 (0.900)	3 (0.080)	3/242	NT	7.5%	coding (821/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase
	?	NC_002947	5318611 =	38 (0.960)					coding (763/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase

CCGACGATTGGCACGTCGGCCTTGATCATCTTCGAGATCGACGCCGGGTCGATGTCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGG  >  NC_002947/5318409‑5318699                                                                                                                                                 |                                                                                                                                                    ccGACGATTGGCACGTCGGCCTTGATCATCTTCGAGATCGACGCCGGGTCGATGTCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑gg                                                                                                                                                 >  3:223116/1‑148 (MQ=255)   gacgaTTGGCACGTCGGCCTTGATCATCTTCGAGATCGACGCCGGGTCGATGTCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCat                                                                                                                                              >  7:73153/1‑149 (MQ=255)       aTTGGCACGTCGGCCTTGATCATCTTCGAGATCGACGCCGGGTCGATGTCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCatgatg                                                                                                                                          <  5:130359/149‑1 (MQ=255)              cGTCGGCCTTGATCATCTTCGAGATCGACGCCGGGTCGATGTCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGcc                                                                                                                                   <  4:264818/149‑1 (MQ=255)                           catcTTCGAGATCGACGCCGGGTCGATGTCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGgtg                                                                                                                       >  4:62961/1‑148 (MQ=255)                            atcTTCGAGATCGACGCCGGGTCGATGTCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGgtgt                                                                                                                      <  6:116678/148‑1 (MQ=255)                               ttCGAGATCGACGCCGGGTCGATGTCGATGTGTATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCTAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCt                                                                                                                  >  8:164516/1‑149 (MQ=255)                                       cGACGCCGGGTCGATGTCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCcatgca                                                                                                          >  8:47243/1‑149 (MQ=255)                                          cGCCGGGTCGATGTCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCatgcatgc                                                                                                       <  3:62961/149‑1 (MQ=255)                                              gggTCGATGTCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATgcatgccgag                                                                                                   >  4:156741/1‑149 (MQ=255)                                                    atgtcgatgtGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATg                                                                                                                                      >  4:64541/1‑108 (MQ=255)                                                    atgtcgatgtGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATg                                                                                                                                      <  3:64541/108‑1 (MQ=255)                                                     tgtcgatgtGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCatga                                                                                                                                            <  1:149399/101‑1 (MQ=255)                                                     tgtcgatgtGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCatga                                                                                                                                            >  2:149399/1‑101 (MQ=255)                                                       ccctgactgaaatcgccaagtcgctgaacctgccggtcaccaataccctgatggggttgggtggcttcccgggtaccgaccgccagttccTC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGcatgccgagcatgccgag                                                                                          >  7:205923‑M1/91‑149 (MQ=255)                                                              tgaaatcgccaagtcgctgaacctgccggtcaccaataccctgatggggttgggtggcttcccgggtaccgaccgccagttccTC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATgcatgccgagcatgc                                                                                              >  1:247091‑M1/84‑138 (MQ=255)                                                              tgaaatcgccaagtcgctgaacctgccggtcaccaataccctgatggggttgggtggcttcccgggtaccgaccgccagttccTC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATgcatgccgagcatgc                                                                                              <  2:247091‑M1/55‑1 (MQ=255)                                                              gAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTgg                                                                                   >  5:219304/1‑149 (MQ=255)                                                               aaTGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGc                                                                                  >  1:46200/1‑149 (MQ=255)                                                                                 gCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGc                                                                <  3:156741/149‑1 (MQ=255)                                                                                 gCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGc                                                                >  8:181660/1‑149 (MQ=255)                                                                                   aGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCa                                                              >  2:92049/1‑149 (MQ=255)                                                                                        ttGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCaa                                                         >  6:101104/1‑149 (MQ=255)                                                                                          ggccgggccgTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAAc                                                        <  7:164516/148‑1 (MQ=255)                                                                                           gccgggccgTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATCGGGGATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAAcc                                                       >  1:77211/1‑149 (MQ=255)                                                                                             cgggccgTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGcatgccgagcatgccgag                                                                                          <  7:42412/111‑1 (MQ=255)                                                                                             cgggccgTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGcatgccgagcatgccgag                                                                                          >  8:42412/1‑111 (MQ=255)                                                                                                   gTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAggg                                              >  8:64757/1‑149 (MQ=255)                                                                                                     ttACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCa                                                 >  4:59954/1‑144 (MQ=255)                                                                                                     ttACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCa                                                 <  3:59954/144‑1 (MQ=255)                                                                                                             tgggcgtcgAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTAcc                                                                        <  2:43810/109‑1 (MQ=255)                                                                                                             tgggcgtcgAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTAcc                                                                        >  1:43810/5‑113 (MQ=255)                                                                                                             cgGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGAc                                    <  4:223116/149‑1 (MQ=255)                                                                                                               gtcgtcGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCg                                  >  4:36919/1‑149 (MQ=255)                                                                                                                tcgtcgAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCgg                                 >  4:172477/1‑149 (MQ=255)                                                                                                                   tcgAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAg                              <  2:46200/149‑1 (MQ=255)                                                                                                                      aaaCGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGtt                           <  2:77211/149‑1 (MQ=255)                                                                                                                         cgcgCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAg                        <  6:219304/149‑1 (MQ=255)                                                                                                                          gcgcACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTg                                         >  7:138921/1‑131 (MQ=255)                                                                                                                          gcgcACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTg                                         <  8:138921/131‑1 (MQ=255)                                                                                                                            gcACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGa                     <  5:101104/149‑1 (MQ=255)                                                                                                                                   cGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCg              <  7:47243/149‑1 (MQ=255)                                                                                                                                               cATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAgg  <  7:64757/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CCGACGATTGGCACGTCGGCCTTGATCATCTTCGAGATCGACGCCGGGTCGATGTCGATGTGAATGATCTTGGCGTTCGGGCAGAACTTGGCCGGGCCGTTTACAACGCGGTCGTCGAAACGCGCACCGACGGCAAAGATGACATC‑GGCATGATGCATGGCCATGTTGGCGGTGTAGCTGCCATGCATGCCGAGCATGCCGAGGAACTGGCGGTCGGTACCCGGGAAGCCACCCAACCCCATCAGGGTATTGGTGACCGGCAGGTTCAGCGACTTGGCGATTTCAGTCAGG  >  NC_002947/5318409‑5318699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.