New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5520860	38 (0.900)	4 (0.100)	4/248	NT	9.6%	coding (926/948 nt)	lip	lipase
	?	NC_002947	= 5520889	39 (0.960)					coding (897/948 nt)	lip	lipase

CGCTGATCGCCGCCGTGGTGCTCGACGAACAACTGGCCAGTTACCACCTGGTCGGCGGCTTGCTGACCTTGGCCGGCGTAGTGCTGGCCGAACGCTGGACCACGCCGATCCGCCGCCAAGGCACTTGAGCTAAAGCCCCGCCGCCTTGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5520709‑5520860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagccTGTGCGGCTGTTCACCGAACATGCAGCCCGGCTCAAGGCGGC  <  NC_002947/5520889‑5520848                                                                                                                                                                                                    CGCTGATCGCCGCCGTGGTGCTCGACGAACAACTGGCCAGTTACCACCTGGTCGGCGGCTTGCTGACCTTGGCCGGCGTAGTGCTGGCCGAACGCTGGACCACGCCGATCCGCCGCCAAGGCACTTGAGCTAAAGCCCCGCCGCCTTGA                                               <  7:48941/149‑1                                           ACCACCTGGTCGGCGGCTTGCTGACCTTGGCCGGCGTAGTGCTGGCCGAACGCTGGACCACGCCGATCCGCCGCCAAGGCACTTGAGCTAAAGCCCCGCCGCCTTGAGCCTGTGCGGCTGTTCACCGAACATGCAGCCCGGCTCAAGG      <  5:264555/148‑1                                              ACCTGGTCGGCGGCTTGCTGACCTTGGCCGGCGTAGTGCTGGCCGAACGCTGGACCACGCCGATCCGCCGCCAAGGCACTTGAGCTAAAGCCCCGCCGCCTTGAGCCTGTGCGGCTGTTCACCGAACATGCAGCCCGGCTCAAGGCGGC  <  5:124127/149‑1                                                                                                              CCGCCGCCAAGGCACTTGAGCTAAAGCCCCGCCGCCTTGAGCCTGTGCGGCTGTTCACCGAACATGCAGCCCGGCTCAA        <  5:120427/79‑1                                                                                                              CCGCCGCCAAGGCACTTGAGCTAAAGCCCCGCCGCCTTGAGCCTGTGCGGCTGTTCACCGAACATGCAGCCCGGCTCAA        >  6:120427/1‑79                                                                                                                                                                                                    CGCTGATCGCCGCCGTGGTGCTCGACGAACAACTGGCCAGTTACCACCTGGTCGGCGGCTTGCTGACCTTGGCCGGCGTAGTGCTGGCCGAACGCTGGACCACGCCGATCCGCCGCCAAGGCACTTGAGCTAAAGCCCCGCCGCCTTGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5520709‑5520860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagccTGTGCGGCTGTTCACCGAACATGCAGCCCGGCTCAAGGCGGC  <  NC_002947/5520889‑5520848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.