New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5586657	33 (0.780)	4 (0.100)	4/248	NT	9.0%	coding (629/1026 nt)	PP_4914	phytase‑like protein
	?	NC_002947	= 5586716	49 (1.210)					coding (570/1026 nt)	PP_4914	phytase‑like protein

TGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5586577‑5586657 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccgCCTGTGGCTGGCTGCCGAGCGTGAGCGCCGTGGCCTGGTGGCCATCGAGCGCCAGCAGTCGGTCTGGACCT  <  NC_002947/5586716‑5586646                                                                                                                                                          TGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGCCTGTGGCTGGCTGCCGAGCGTGAGCGCCGACGCCTGGTGGCCATCGAGCGCCAGCAGTCGGTCTGGA     >  3:82567/1‑149    caggGGGCATCTGCGCGGGTTGCAGTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGCCTGTGGCTGGCTGCCGAGCGGGAGCGCCGTGGCCTGGTGGCCATCGAGCGCCAGCAGTCGGTCTGGACCT  <  4:82567/145‑1                             TTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGCCTGTGGCTGGCTGCCGAGCGTGAGCGCCGTGGCCTGGTGGCCATCGAGCGCCAGCAGTCGGTCT        >  3:152003/1‑118                             TTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGCCTGTGGCTGGCTGCCGAGCGTGAGCGCCGTGGCCTGGTGGCCATCGAGCGCCAGCAGTCGGTCT        <  4:152003/118‑1                                                                                CGCCTGTGGCTGGCTGCCGAGCGTGAGCGCCGTGGCCTGGTGGCCATCGAGCGCCAGCAGTCGGTCTG       <  3:24685/68‑1                                                                                CGCCTGTGGCTGGCTGCCGAGCGTGAGCGCCGTGGCCTGGTGGCCATCGAGCGCCAGCAGTCGGTCTG       >  4:24685/1‑68                                                                                                                                                          TGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5586577‑5586657 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccgCCTGTGGCTGGCTGCCGAGCGTGAGCGCCGTGGCCTGGTGGCCATCGAGCGCCAGCAGTCGGTCTGGACCT  <  NC_002947/5586716‑5586646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.