New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5586657	33 (0.780)	4 (0.100)	4/248	NT	9.0%	coding (629/1026 nt)	PP_4914	phytase‑like protein
	?	NC_002947	= 5586716	49 (1.210)					coding (570/1026 nt)	PP_4914	phytase‑like protein

TTACGTTCGAGGGTAAACAGCTTGCCCTCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGC  >  NC_002947/5586510‑5586797                                                                                                                                                    |                                                                                                                                             ttACGTTCGAGGGTAAACAGCTTGCCCTCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGa                                                                                                                                             <  7:168526/149‑1 (MQ=255) ttACGTTCGAGGGTAAACAGATTGCCCTCGAACCAGGCCATGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCACGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGa                                                                                                                                             <  7:167195/149‑1 (MQ=255)         gAGGGTAAACAGCTTGCCCTCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTgg                                                                                                                                      <  8:101402/148‑1 (MQ=255)         gAGGGTAAACAGCTTGCCCTCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACACTACCACGCCCGCAGGTCCAGACCGACTGCTGgc                                                                                                                                     <  6:219015/149‑1 (MQ=255)           gggTAAACAGCTTGCCCTCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGCCCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGgcgc                                                                                                                                   <  5:117130/149‑1 (MQ=255)             gTAAACAGCTTGCCCTCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGGGCGGGTTGCATTTCTACCCCCGCCTCGCTCTGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTc                                                                                                                                 <  5:158829/149‑1 (MQ=255)                 aCAGCTTGCCCTCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATg                                                                                                                             >  6:135665/1‑149 (MQ=255)                           cTCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGCCCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGc                                                                                                                   >  1:121864/1‑149 (MQ=255)                           cTCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGActg                                                                                                                                          >  8:248968/1‑126 (MQ=255)                           cTCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGActg                                                                                                                                          <  7:248968/126‑1 (MQ=255)                            tCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGcc                                                                                                                  >  7:204060/1‑149 (MQ=255)                               aaCCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCatc                                                                                                               <  1:52998/149‑3 (MQ=255)                                  caggccaggTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGgcg                                                                                                            >  3:146684/1‑149 (MQ=255)                                           gccgtccaGTCCCGCGCCAGTGCCCTGGCATTGGGCACCCGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTc                                                                                                   <  4:137635/142‑1 (MQ=255)                                             aGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCgg                                                                                                 >  5:11232/1‑149 (MQ=255)                                                      gcgcgACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCagccagcc                                                                                        >  4:81271/1‑149 (MQ=255)                                                       cgcgACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCAc                                                                                                                <  2:132216/124‑1 (MQ=255)                                                       cgcgACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCAc                                                                                                                >  1:132216/1‑124 (MQ=255)                                                                  ccTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCAc                                                                            <  8:204060/149‑1 (MQ=255)                                                                   cTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCAcc                                                                           <  4:146684/149‑1 (MQ=255)                                                                    tGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGcctgtggctggctgccgagcgtgagcgccgacgcctggtggccatcgagcgccagcagtcggtctgga                                                                          >  3:82567‑M1/1‑81 (MQ=255)                                                                       cagggggcatcTGCGCGGGTTGCAGTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGcctgtggctggctgccgagcgggagcgccgtggcctggtggccatcgagcgccagcagtcggtctggacct                                                                       <  4:82567‑M1/145‑72 (MQ=255)                                                                        aTTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACccgccg                                                                      <  1:53465/149‑1 (MQ=255)                                                                         ttGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCgg                                                                     <  8:11226/149‑1 (MQ=255)                                                                           gggCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCggg                                                                    <  4:231832/148‑1 (MQ=255)                                                                                    cgcgGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGACGGTCACCCGCCGGGTTGATCGcc                                                           >  6:87677/1‑148 (MQ=255)                                                                                     gcgGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGACGGTCACCCGCCGGGTTGATCGCCaa                                                         <  5:87677/149‑1 (MQ=255)                                                                                                ttCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGcctgtggctggctgccgagcgtgagcgccgtggcctggtggccatcgagcgccagcagtcggtct                                                                             >  3:152003‑M1/1‑53 (MQ=255)                                                                                                ttCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGcctgtggctggctgccgagcgtgagcgccgtggcctggtggccatcgagcgccagcagtcggtct                                                                             <  4:152003‑M1/118‑66 (MQ=255)                                                                                                   gACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAgg                                            <  5:135665/148‑1 (MQ=255)                                                                                                        ccGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCAtt                                       >  8:64480/1‑148 (MQ=255)                                                                                                              cGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGtt                                 >  3:10800/1‑148 (MQ=255)                                                                                                                     cagcaCGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAgcagca                         >  2:82935/1‑149 (MQ=255)                                                                                                                           gCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGGCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGc                   >  1:220651/1‑149 (MQ=255)                                                                                                                             aaCCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCCCAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCtt                 >  7:113500/1‑149 (MQ=255)                                                                                                                               ccACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGc               >  5:174109/1‑149 (MQ=255)                                                                                                                               ccACGCCCGAAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACAAGGCCACGGCGATAAAGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTAGAACAGGGCATTGAAGTTCAGCAGCATGCAGATTGc               >  2:71436/1‑149 (MQ=255)                                                                                                                                   gCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAg                                   <  5:15167/125‑1 (MQ=255)                                                                                                                                   gCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAg                                   >  6:15167/1‑125 (MQ=255)                                                                                                                                        cAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTg      <  7:64480/149‑1 (MQ=255)                                                                                                                                        cAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTg      <  3:99076/149‑1 (MQ=255)                                                                                                                                         aGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCCCGCTCGGCAGCCAGCCACAGGcggtctggacctgcgggcgtggttgcgtgctgctgagcgaggcgggggtcgaactgcaacccgcgcagatgccccctg     <  4:82567‑M2/149‑79 (MQ=255)                                                                                                                                            tCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCGTCGGCGCTCACGCTCGGCAGCCAGCCACAGGcggtctggacctgcgggcgtggttgcgtgctgctgagcgaggcgggggtcgaaatgcaacccgcgcagatgcccaatgcca  >  3:82567‑M2/1‑68 (MQ=255)                                                                                                                                              cAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGcg                                                                                 <  3:24685‑M2/68‑3 (MQ=255)                                                                                                                                              cAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGcg                                                                                 >  4:24685‑M2/1‑66 (MQ=255)                                                                                                                                               aGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGcggtctggacctgcgggcgtggttgcgtgctgctgagcgaggcgggggtcgaa                              >  3:152003‑M2/1‑65 (MQ=255)                                                                                                                                               aGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGcggtctggacctgcgggcgtggttgcgtgctgctgagcgaggcgggggtcgaa                              <  4:152003‑M2/118‑54 (MQ=255)                                                                                                                                                gACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCgg           >  8:118204/1‑136 (MQ=255)                                                                                                                                                gACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCgg           <  7:118204/136‑1 (MQ=255)                                                                                                                                                   cGcctgtggctggctgccgagcgtgagcgccgtggcctggtggccatcgagcgccagcagtcggtctg                                                                            <  3:24685‑M1/68‑67 (MQ=255)                                                                                                                                                   cGcctgtggctggctgccgagcgtgagcgccgtggcctggtggccatcgagcgccagcagtcggtctg                                                                            >  4:24685‑M1/1‑2 (MQ=255)                                                                                                                                                   cGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATc                                                              >  2:146716/1‑82 (MQ=255)                                                                                                                                                   cGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATc                                                              <  1:146716/82‑1 (MQ=255)                                                                                                                                                   cGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTc                                                   >  2:149490/1‑93 (MQ=255)                                                                                                                                                   cGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTc                                                   <  1:149490/93‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                             TTACGTTCGAGGGTAAACAGCTTGCCCTCGAACCAGGCCAGGTCAGCGAAGTCGCGCGACAGGGCCCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGC  >  NC_002947/5586510‑5586797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.