New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5586657	33 (0.780)	4 (0.100)	4/248	NT	9.0%	coding (629/1026 nt)	PP_4914	phytase‑like protein
	?	NC_002947	= 5586716	49 (1.210)					coding (570/1026 nt)	PP_4914	phytase‑like protein

CCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGCCTTCCAGCGGCAATTGCAGCACCGCG  >  NC_002947/5586575‑5586860                                                                                                                                              |                                                                                                                                                 ccTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCAc                                                                                                                                           <  8:204060/149‑1 (MQ=255)  cTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCAcc                                                                                                                                          <  4:146684/149‑1 (MQ=255)       aTTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACccgccg                                                                                                                                     <  1:53465/149‑1 (MQ=255)        ttGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCgg                                                                                                                                    <  8:11226/149‑1 (MQ=255)          gggCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCggg                                                                                                                                   <  4:231832/148‑1 (MQ=255)                   cgcgGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGACGGTCACCCGCCGGGTTGATCGcc                                                                                                                          >  6:87677/1‑148 (MQ=255)                    gcgGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGACGGTCACCCGCCGGGTTGATCGCCaa                                                                                                                        <  5:87677/149‑1 (MQ=255)                                  gACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAgg                                                                                                           <  5:135665/148‑1 (MQ=255)                                       ccGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCAtt                                                                                                      >  8:64480/1‑148 (MQ=255)                                             cGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGtt                                                                                                >  3:10800/1‑148 (MQ=255)                                                    cagcaCGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAgcagca                                                                                        >  2:82935/1‑149 (MQ=255)                                                          gCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGGCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGc                                                                                  >  1:220651/1‑149 (MQ=255)                                                            aaCCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCCCAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCtt                                                                                >  7:113500/1‑149 (MQ=255)                                                              ccACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGc                                                                              >  5:174109/1‑149 (MQ=255)                                                              ccACGCCCGAAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACAAGGCCACGGCGATAAAGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTAGAACAGGGCATTGAAGTTCAGCAGCATGCAGATTGc                                                                              >  2:71436/1‑149 (MQ=255)                                                                  gCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAg                                                                                                  <  5:15167/125‑1 (MQ=255)                                                                  gCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAg                                                                                                  >  6:15167/1‑125 (MQ=255)                                                                       cAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTg                                                                     <  3:99076/149‑1 (MQ=255)                                                                       cAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTg                                                                     <  7:64480/149‑1 (MQ=255)                                                                        aGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCCCGCTCGGCAGCCAGCCACAGGcggtctggacctgcgggcgtggttgcgtgctgctgagcgaggcgggggtcgaactgcaacccgcgcagatgccccctg                                                                    <  4:82567‑M2/149‑79 (MQ=255)                                                                           tCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCGTCGGCGCTCACGCTCGGCAGCCAGCCACAGGcggtctggacctgcgggcgtggttgcgtgctgctgagcgaggcgggggtcgaaatgcaacccgcgcagatgcccaatgcca                                                                 >  3:82567‑M2/1‑68 (MQ=255)                                                                             cAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGcg                                                                                                                                                <  3:24685‑M2/68‑3 (MQ=255)                                                                             cAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGcg                                                                                                                                                >  4:24685‑M2/1‑66 (MQ=255)                                                                              aGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGcggtctggacctgcgggcgtggttgcgtgctgctgagcgaggcgggggtcgaa                                                                                             >  3:152003‑M2/1‑65 (MQ=255)                                                                              aGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGcggtctggacctgcgggcgtggttgcgtgctgctgagcgaggcgggggtcgaa                                                                                             <  4:152003‑M2/118‑54 (MQ=255)                                                                               gACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCgg                                                                          <  7:118204/136‑1 (MQ=255)                                                                               gACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCgg                                                                          >  8:118204/1‑136 (MQ=255)                                                                                  cGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATc                                                                                                                             <  1:146716/82‑1 (MQ=255)                                                                                  cGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATc                                                                                                                             >  2:146716/1‑82 (MQ=255)                                                                                  cGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTc                                                                                                                  <  1:149490/93‑1 (MQ=255)                                                                                  cGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTc                                                                                                                  >  2:149490/1‑93 (MQ=255)                                                                                        ctgGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGc                                                         >  5:188689/1‑144 (MQ=255)                                                                                        ctgGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGc                                                         <  6:188689/144‑1 (MQ=255)                                                                                        ctgGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGt                                                    <  1:82935/149‑1 (MQ=255)                                                                                           gcgcTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGtt                                                                                                <  8:93251/102‑1 (MQ=255)                                                                                             gcTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATc                                               >  7:125841/1‑149 (MQ=255)                                                                                                 gATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGc                                            >  6:37648/1‑148 (MQ=255)                                                                                                 gATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGc                                            >  8:34684/1‑148 (MQ=255)                                                                                                   tGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAAc                                         <  2:220651/149‑1 (MQ=255)                                                                                                       caccaGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGt                                     >  2:122748/1‑149 (MQ=255)                                                                                                         ccaGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTcc                                   <  1:71436/149‑1 (MQ=255)                                                                                                         ccaGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTcc                                   >  7:56416/1‑149 (MQ=255)                                                                                                         ccaGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTcc                                   <  1:122748/149‑1 (MQ=255)                                                                                                           aGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCgg                                 >  5:24833/1‑149 (MQ=255)                                                                                                                aCGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCTACCAGTCCGGCTCGc                            >  2:37236/1‑149 (MQ=255)                                                                                                                  ggCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCTACCAGTCCGGCTCGCCt                          <  1:37236/149‑1 (MQ=255)                                                                                                                         aCGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGTCTTCCAGCg                   <  6:24833/149‑1 (MQ=255)                                                                                                                           gCTCGGCAGCCAGCCACAGGCGGTCACTCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGCCTTCCAGCgg                  >  6:172252/1‑148 (MQ=255)                                                                                                                           gCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGCCTTCCAGCgg                  >  7:175239/1‑148 (MQ=255)                                                                                                                           gCTAGGCAGCCAGCCACAGGCGCTAACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCACGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGCCTTCCAGCgc                  >  6:213807/1‑147 (MQ=255)                                                                                                                               ggCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGCCTTCCAGTGGCAAt              <  8:125841/148‑1 (MQ=255)                                                                                                                                  agccagccACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGTGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGc                            <  5:25655/131‑1 (MQ=255)                                                                                                                                  agccagccACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGCCTTCCAGCGGCAATTgca          <  3:81271/149‑1 (MQ=255)                                                                                                                                  agccagccACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGCGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGc                            >  6:25655/1‑131 (MQ=255)                                                                                                                                    ccagccaCAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCAGCAACCAGTCCGGCTCGCCTTCCAGCGGCAATTgcag         >  2:86825/1‑148 (MQ=255)                                                                                                                                     cagcctCAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGCCTTCCAGCGGCAATTgcagca       >  1:255648/1‑149 (MQ=255)                                                                                                                                     cagccaCAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGCCTTCCAGCGGCAATTgcagca       >  7:69385/1‑149 (MQ=255)                                                                                                                                          acaGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGCCTTCCAGCGGCAATTGCAGCACcgcg  <  5:172252/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                 CCTGGCATTGGGCATCTGCGCGGGTTGCATTTCGACCCCCGCCTCGCTCAGCAGCACGCAACCACGCCCGCAGGTCCAGACCGACTGCTGGCGCTCGATGGCCACCAGGCCACGGCGCTCACGCTCGGCAGCCAGCCACAGGCGGTCACCCGCCGGGTTGATCGCCAAACCTTCGAACAGGGCATTGAAGTTCAGCAGCATGCCGCTTGCCCGGGCCTGGCGCACCATGGCCGAGTCGATCCGCAACCAGTCCGGCTCGCCTTCCAGCGGCAATTGCAGCACCGCG  >  NC_002947/5586575‑5586860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.