New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5792613 =	44 (1.040)	4 (0.100)	4/240	NT	9.2%	coding (718/1419 nt)	gltD	glutamate synthase subunit beta
	?	NC_002947	5792679 =	38 (0.970)					coding (652/1419 nt)	gltD	glutamate synthase subunit beta

ACCTTCGGTATCCCCGAGTTCAAGCTGGAAAAGACCGTGCTCAGCAACCGCCGTGAAGTGTTCACCGGCATGGGCATCGAGTTCCGCCTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5792766‑5792613 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgttcaGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCG  >  NC_002947/5792679‑5792797                                                                                                                                                                                                                                                                                   ACCTTCGGTATCCCCGAGTTCAAGCTGGAAAAGACCGTGCTCAGCAACCGCCGTGAAGTGTTCACCGGCATGGGCATCGAGTTCCGCCTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGT                                                                                                                              >  3:220339/1‑149    TTCGGTATCCCCGAGTTCAAGCTGGAAAAGACCGTGCTCAGCAACCGCCGTGAAGTGTTCACCGGCATGGGCATCGAGTTCCGCCTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTG                                                                                                                             >  1:193112/1‑147    TTCGGTATCCCCGAGTTCAAGCTGGAAAAGACCGTGCTCAGCAACCGCCGTGAAGTGTTCACCGGCATGGGCATCGAGTTCCGCCTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTG                                                                                                                             <  2:193112/147‑1                                                                                       CCTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATAC                                        >  1:65666/1‑149                                                                                        CTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACC                                       >  1:232607/1‑149                                                                                                                   ACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGG            <  2:65666/149‑1                                                                                                                             AGCTGCTCGCCGAGTACGACGCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCG  <  2:232607/149‑1                                                                                                                                                         CAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTG     <  1:95304/118‑1                                                                                                                                                         CAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTG     >  2:95304/1‑118                                                                                                                                                                                                                                                                                   ACCTTCGGTATCCCCGAGTTCAAGCTGGAAAAGACCGTGCTCAGCAACCGCCGTGAAGTGTTCACCGGCATGGGCATCGAGTTCCGCCTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5792766‑5792613 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgttcaGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCG  >  NC_002947/5792679‑5792797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.