New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5792613 =	44 (1.040)	4 (0.100)	4/240	NT	9.2%	coding (718/1419 nt)	gltD	glutamate synthase subunit beta
	?	NC_002947	5792679 =	38 (0.970)					coding (652/1419 nt)	gltD	glutamate synthase subunit beta

CCCTGCATGTCGACGAAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATAC  >  NC_002947/5792465‑5792759                                                                                                                                                     |                                                                                                                                                   cccTGCATGTCGACGAAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTAcccatgcccat                                                                                                                                                    <  2:26916/149‑1 (MQ=255) cccTGCATGTCGACGAAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTAcccatgcccat                                                                                                                                                    <  5:163391/149‑1 (MQ=255) cccTGCATGTCGACGAAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTAcccatgcccat                                                                                                                                                    <  5:92570/149‑1 (MQ=255) cccTGCATGTCGACGAAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTAcccatgcccat                                                                                                                                                    <  7:90376/149‑1 (MQ=255)  ccTGCATGTCGACGAAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTAcccatgcccat                                                                                                                                                    >  6:28799/1‑148 (MQ=255)      cATGTCGACGAAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAaca                                                                                                                                               >  3:143816/1‑149 (MQ=255)         gTCGACGAAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACcg                                                                                                                                            >  5:257335/1‑149 (MQ=255)            gacgaAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGcgt                                                                                                                                         >  1:111378/1‑149 (MQ=255)            gacgaAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGcgt                                                                                                                                         >  3:60917/1‑149 (MQ=255)               gaAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGAGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCAATGAACACCGcttcg                                                                                                                                       >  7:52558/1‑148 (MQ=255)                      tCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGc                                                                                                                               >  5:112338/1‑149 (MQ=255)                       ccGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGc                                                                                                                               >  6:151793/1‑148 (MQ=255)                          gCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGag                                                                                                                            >  4:206185/1‑148 (MQ=255)                            gACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGagcag                                                                                                                         <  6:184930/149‑1 (MQ=255)                              cgacaaaaaccctgagatcggtggcctgctgaccttcggtatccccgagttcaagctggaaaagaccgtgctcagcaaccgccgtgaagtgttcaccggcatgggcatcgagttccgccTGAACACCGCGTCGTACTCGGCGAGCAGCt                                                                                                                       <  2:232607‑M1/30‑1 (MQ=255)                                tctcGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGcgtc                                                                                                                                        <  4:226423/130‑1 (MQ=255)                                tctcGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGcgtc                                                                                                                                        >  3:226423/1‑130 (MQ=255)                                 caaaaaccctgagatcggtggcctgctgaccttcggtatccccgagttcaagctggaaaagaccgtgctcagcaaccgccgtgaagtgttcaccggcatgggcatcgagttccgccTg                                                                                                                                                   <  1:95304‑M1/2‑1 (MQ=255)                                 caaaaaccctgagatcggtggcctgctgaccttcggtatccccgagttcaagctggaaaagaccgtgctcagcaaccgccgtgaagtgttcaccggcatgggcatcgagttccgccTg                                                                                                                                                   >  2:95304‑M1/117‑118 (MQ=255)                                    gAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCa                                                                                                                 >  1:138220/1‑149 (MQ=255)                                    gAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCa                                                                                                                 <  1:174314/149‑1 (MQ=255)                                        cctgagatcggtggcctgctgaccttcggtatccccgagttcaagctggaaaagaccgtgctcagcaaccgccgtgaagtgttcaccggcatgggcatcgagttccgccTGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGt                                                                                                             <  2:65666‑M1/40‑1 (MQ=255)                                                    ttGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGCGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGcc                                                                                                 <  5:59474/149‑1 (MQ=255)                                                             tctaTCAGGAAGTCCAGTTGGTCATGCAGGCCCGGCAGGTCATCACCGGGGTAGCCGCCCTTCTTGTATGTGTAGGTAACCTTGCGGATGATCTGCGCGTGGTACTCGGCGAGCAGCTGTTCCATGGTCTGATCCTTGCCCACCTCGgt                                                                                        <  8:52558/146‑1 (MQ=255)                                                             gCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCg                                                                                          >  8:134460/1‑147 (MQ=255)                                                             gCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCg                                                                                          <  7:134460/147‑1 (MQ=255)                                                             gCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGgt                                                                                        <  4:143816/149‑1 (MQ=255)                                                               gATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATc                                                                                                       <  5:100747/132‑1 (MQ=255)                                                               gATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATc                                                                                                       >  6:100747/1‑132 (MQ=255)                                                               gATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGgtgt                                                                                      >  8:25411/1‑149 (MQ=255)                                                                   ggtatccccgagttcaagctggaaaagaccgtgctcagcaaccgccgtgaagtgttcaccggcatgggcatcgagttccgccTGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAg                                                                                  >  1:232607‑M1/83‑149 (MQ=255)                                                                    gtatccccgagttcaagctggaaaagaccgtgctcagcaaccgccgtgaagtgttcaccggcatgggcatcgagttccgccTGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAgg                                                                                 >  1:65666‑M1/82‑149 (MQ=255)                                                                     gAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGc                                                                                <  3:97398/149‑1 (MQ=255)                                                                     gAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGc                                                                                <  4:60917/149‑1 (MQ=255)                                                                     gAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGc                                                                                <  2:226009/149‑1 (MQ=255)                                                                          ccAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTc                                                                                                            <  8:132984/116‑1 (MQ=255)                                                                           cAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACt                                                                          <  2:111378/149‑1 (MQ=255)                                                                              tGCTTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCTGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGa                                                                       <  2:63442/149‑1 (MQ=255)                                                                                   cATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGc                                                                                >  3:123500/1‑135 (MQ=255)                                                                                   cATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGc                                                                                <  4:123500/135‑1 (MQ=255)                                                                                            ccGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTg                                                         <  2:138220/149‑1 (MQ=255)                                                                                            ccGGCAGGGATTCCCCCGGTAAGCCGACCTTGATCTAGTTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGTCTAGCAGCTGTTCCATGGTCACATCCTTGCCCAACTCGGTTTTCAGGCGGAACTGGATGCCGATGCCGGTg                                                         <  4:210296/149‑1 (MQ=255)                                                                                             cGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGa                                                        <  5:28799/149‑1 (MQ=255)                                                                                                         aCCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCAcggc                                            >  8:246601/1‑149 (MQ=255)                                                                                                              ggAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTg                                       <  5:151793/149‑1 (MQ=255)                                                                                                                        cTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACgg                             >  3:97259/1‑149 (MQ=255)                                                                                                                        cTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACgg                             <  3:206185/149‑1 (MQ=255)                                                                                                                             tgtaggtgtaggTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCttt                        >  5:210705/1‑149 (MQ=255)                                                                                                                                 ggtgtaggtACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAaca                                                     <  7:150776/116‑1 (MQ=255)                                                                                                                                 ggtgtaggtACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAaca                                                     >  8:150776/1‑116 (MQ=255)                                                                                                                                     taggtACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCtt                >  3:217548/1‑149 (MQ=255)                                                                                                                                        gtACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGa              >  4:220339/1‑148 (MQ=255)                                                                                                                                          aCCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACt           >  4:262627/1‑149 (MQ=255)                                                                                                                                             catgcccatgAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCgg        <  7:246601/149‑1 (MQ=255)                                                                                                                                             catgcccatgAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGGGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCgg        <  6:257335/149‑1 (MQ=255)                                                                                                                                                   catgAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATAc  <  3:262627/149‑1 (MQ=255)                                                                                                                                                   catgAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATAc  <  4:217548/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCCTGCATGTCGACGAAGTCTTCCGGCGACTTCTCGAAGCCCAGGTTGCGGTTGACGTTGGCGATCAGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATAC  >  NC_002947/5792465‑5792759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.