New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5792613 =	44 (1.040)	4 (0.100)	4/240	NT	9.2%	coding (718/1419 nt)	gltD	glutamate synthase subunit beta
	?	NC_002947	5792679 =	38 (0.970)					coding (652/1419 nt)	gltD	glutamate synthase subunit beta

AGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTAC  >  NC_002947/5792531‑5792814                                                                                                                                                     |                                                                                                                                        ggtatccccgagttcaagctggaaaagaccgtgctcagcaaccgccgtgaagtgttcaccggcatgggcatcgagttccgccTGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAg                                                                                                                                         >  1:232607‑M1/83‑149 (MQ=255)  gtatccccgagttcaagctggaaaagaccgtgctcagcaaccgccgtgaagtgttcaccggcatgggcatcgagttccgccTGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAgg                                                                                                                                        >  1:65666‑M1/82‑149 (MQ=255)   gAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGc                                                                                                                                       <  3:97398/149‑1 (MQ=255)   gAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGc                                                                                                                                       <  4:60917/149‑1 (MQ=255)   gAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGc                                                                                                                                       <  2:226009/149‑1 (MQ=255)         cAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACt                                                                                                                                 <  2:111378/149‑1 (MQ=255)            tGCTTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCTGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGa                                                                                                                              <  2:63442/149‑1 (MQ=255)                 cATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGc                                                                                                                                       <  4:123500/135‑1 (MQ=255)                 cATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGc                                                                                                                                       >  3:123500/1‑135 (MQ=255)                          ccGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTg                                                                                                                <  2:138220/149‑1 (MQ=255)                          ccGGCAGGGATTCCCCCGGTAAGCCGACCTTGATCTAGTTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGTCTAGCAGCTGTTCCATGGTCACATCCTTGCCCAACTCGGTTTTCAGGCGGAACTGGATGCCGATGCCGGTg                                                                                                                <  4:210296/149‑1 (MQ=255)                           cGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGa                                                                                                               <  5:28799/149‑1 (MQ=255)                                       aCCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCAcggc                                                                                                   >  8:246601/1‑149 (MQ=255)                                            ggAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTg                                                                                              <  5:151793/149‑1 (MQ=255)                                                      cTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACgg                                                                                    <  3:206185/149‑1 (MQ=255)                                                      cTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACgg                                                                                    >  3:97259/1‑149 (MQ=255)                                                           tgtaggtgtaggTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCttt                                                                               >  5:210705/1‑149 (MQ=255)                                                               ggtgtaggtACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAaca                                                                                                            <  7:150776/116‑1 (MQ=255)                                                               ggtgtaggtACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAaca                                                                                                            >  8:150776/1‑116 (MQ=255)                                                                   taggtACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCtt                                                                       >  3:217548/1‑149 (MQ=255)                                                                      gtACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGa                                                                     >  4:220339/1‑148 (MQ=255)                                                                        aCCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACt                                                                  >  4:262627/1‑149 (MQ=255)                                                                           catgcccatgAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCgg                                                               <  7:246601/149‑1 (MQ=255)                                                                           catgcccatgAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGGGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCgg                                                               <  6:257335/149‑1 (MQ=255)                                                                                 cctgaacaccgaggtgggcaaggatgtgaccatggaacagctgctcgccgagtacgacgcggtgttcaGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATAc                                                         >  1:65666‑M2/69‑149 (MQ=255)                                                                                 catgAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATAc                                                         <  3:262627/149‑1 (MQ=255)                                                                                 catgAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATAc                                                         <  4:217548/149‑1 (MQ=255)                                                                                  ctgaacaccgaggtgggcaaggatgtgaccatggaacagctgctcgccgagtacgacgcggtgttcaGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATAcc                                                        >  1:232607‑M2/68‑149 (MQ=255)                                                                                       CACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGaa                                                     >  1:193112‑M1/1‑147 (MQ=255)                                                                                       CACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGaa                                                     <  2:193112‑M1/147‑1 (MQ=255)                                                                                        ACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGt                                                  >  3:220339‑M1/1‑149 (MQ=255)                                                                                            cgtcgtACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCt                                                                        >  8:1476/1‑123 (MQ=255)                                                                                                gtACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGc                                          >  5:204949/1‑149 (MQ=255)                                                                                                  aCTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCa                                        >  7:89692/1‑149 (MQ=255)                                                                                                      ggCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGa                                    >  7:10860/1‑149 (MQ=255)                                                                                                           gcagcTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCa                               <  4:97259/149‑1 (MQ=255)                                                                                                            cagcTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCa                               <  8:89692/148‑1 (MQ=255)                                                                                                             agcTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAgg                             <  6:112338/149‑1 (MQ=255)                                                                                                             accatggaacagctgctcgccgagtacgacgcggtgttcaGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAgg                             <  2:65666‑M2/109‑1 (MQ=255)                                                                                                                  ttCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGttt                         <  6:204949/148‑1 (MQ=255)                                                                                                                    ccATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCgg                                                               <  1:171616/108‑1 (MQ=255)                                                                                                                    ccATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCgg                                                               >  2:171616/1‑108 (MQ=255)                                                                                                                      aTGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTc                    <  6:204895/149‑1 (MQ=255)                                                                                                                      aTGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTc                    >  5:204895/1‑149 (MQ=255)                                                                                                                       agctgctcgccgagtacgacgcggtgttcaGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCg                   <  2:232607‑M2/119‑1 (MQ=255)                                                                                                                          tCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTc                    <  7:225653/145‑1 (MQ=255)                                                                                                                          tCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTc                    >  8:225653/1‑145 (MQ=255)                                                                                                                            acaTCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAacac              >  1:261753/1‑149 (MQ=255)                                                                                                                                 cTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCg         >  4:235085/1‑149 (MQ=255)                                                                                                                                    gCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTcagca                                             <  5:173600/110‑1 (MQ=255)                                                                                                                                    gCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTcagca                                             >  6:173600/1‑110 (MQ=255)                                                                                                                                     cccACATCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGt     >  7:74467/1‑149 (MQ=255)                                                                                                                                        aCCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTAAGCCGGCCACCGATCTCAGGGTTTTTGTCGCACCCACCCGGGGTTAc  >  5:31967/1‑149 (MQ=255)                                                                                                                                                   caGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTg                      >  2:95304‑M2/3‑118 (MQ=255)                                                                                                                                                   caGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTg                      <  1:95304‑M2/116‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                        AGGAAGTCCAGTGCGTCATGCACGCCCGGCAGGTCTTCACCCGGGAAGCCGCCCTTCATGTAGGTGTAGGTACCCATGCCCATGAACACCGCGTCGTACTCGGCGAGCAGCTGTTCCATGGTCACATCCTTGCCCACCTCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTAC  >  NC_002947/5792531‑5792814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.