New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5958580 =	44 (1.040)	6 (0.150)	6/248	NT	14.2%	coding (1984/2856 nt)	cyaA	adenylate cyclase
	?	NC_002947	5958605 =	30 (0.740)					coding (2009/2856 nt)	cyaA	adenylate cyclase

GGGTCGTCAGGCTGACATGCTCGGGCAAAAGCTCCAGCACATGGGTGTGTTGGGCCACTTGTAGCAGGTAGCGGTGGTGGAGCCCTTGGTCCCGCAGCAGCTGCACAGTGTCGAAAATTTCCTCTACGCGCTGGCCGATAGGCTGGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5958730‑5958580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGCCTGACGACCCTGGCCGAGCATGAGGCGCTG  >  NC_002947/5958605‑5958750                                                                                                                                                                                                                                                                                                           GGGTCGTCAGGCTGACATGCTCGGGCAAAAGCTCCAGCACATGGGTGTGTTGGGCCACTTGTAGCAGGTAGCGGTGGTGGAGCCCTTGGTCCCGCAGCAGCTGCACAGTGTCGAAAATTTCCTCTACGCGCTGGCCGATAGGCTGGGCG                                                                                                                                                      >  3:137159/1‑149           GCTGACATGCTCGGGCAAAAGCTCCAGCACATGGGTGTGTTGGGCCACTTGTAGCAGGTAGCGGTGGTGGAGCCCTTGGTCCCGCAGCAGCTGCACAGTGTCGAAAATTTCCTCTACGCGCTGGCCGATAGGCTGGG                                                                                                                                                        >  5:206496/1‑137           GCTGACATGCTCGGGCAAAAGCTCCAGCACATGGGTGTGTTGGGCCACTTGTAGCAGGTAGCGGTGGTGGAGCCCTTGGTCCCGCAGCAGCTGCACAGTGTCGAAAATTTCCTCTACGCGCTGGCCGATAGGCTGGG                                                                                                                                                        <  6:206496/137‑1                                                                                                                  AAAATTTCCTCTACGCGCTGGCCGATAGGCTGGGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGC                                              <  7:47956/140‑1                                                                                                                  AAAATTTCCTCTACGCGCTGGCCGATAGGCTGGGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGC                                              >  8:47956/1‑140                                                                                                                           TCTACGCGCTGGCCGATAGGCTGGGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACC                                                                                        <  1:189363/89‑1                                                                                                                           TCTACGCGCTGGCCGATAGGCTGGGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACC                                                                                        >  2:189363/1‑89                                                                                                                             TACGCGCTGGCCGATAGGCTGGGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGCCTGAC                           >  3:32886/1‑148                                                                                                                                  GCTGGCCGATAGGCTGGGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGCCTGACGACCCT                     >  4:15513/1‑149                                                                                                                                                     GCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGCCTGACGACCCTGGCCGAGCATGAGGCGCTG  <  3:15513/149‑1                                                                                                                                                                                                                                                                                                           GGGTCGTCAGGCTGACATGCTCGGGCAAAAGCTCCAGCACATGGGTGTGTTGGGCCACTTGTAGCAGGTAGCGGTGGTGGAGCCCTTGGTCCCGCAGCAGCTGCACAGTGTCGAAAATTTCCTCTACGCGCTGGCCGATAGGCTGGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5958730‑5958580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGCCTGACGACCCTGGCCGAGCATGAGGCGCTG  >  NC_002947/5958605‑5958750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.