New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5958580 =	44 (1.040)	6 (0.150)	6/248	NT	14.2%	coding (1984/2856 nt)	cyaA	adenylate cyclase
	?	NC_002947	5958605 =	30 (0.740)					coding (2009/2856 nt)	cyaA	adenylate cyclase

AGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGCCTGACGACCCTGGCCGAGCATGAGGCGCTG  >  NC_002947/5958458‑5958750                                                                                                                                                    |                                                                                                                                                  aGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTa                                                                                                                                                  <  3:132209/149‑1 (MQ=255)  gtcaggctgacatgctcgggcaaaagctccagcacatgggtgtgttgggccacttgtagcaggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctaCGCGCCCAGCCTATCGGCCAGCGCGTa                                                                                                                                                  >  3:32886‑M1/122‑148 (MQ=255)        ggTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGaaa                                                                                                                                           >  3:92129/1‑149 (MQ=255)         gTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGaa                                                                                                                                            <  2:210901/147‑1 (MQ=255)              gcgcTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCg                                                                                                                                     >  7:252634/1‑149 (MQ=255)                  tATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGacac                                                                                                                                 >  1:136245/1‑149 (MQ=255)                  tATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGacac                                                                                                                                 >  1:200617/1‑149 (MQ=255)                    tGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACtg                                                                                                                               <  4:92129/149‑1 (MQ=255)                    tGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACtg                                                                                                                               >  4:137159/1‑149 (MQ=255)                     gcaaaagctccagcacatgggtgtgttgggccacttgtagcaggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctaCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAAtttt                                                                                                                                       >  8:47956‑M1/103‑140 (MQ=255)                     gcaaaagctccagcacatgggtgtgttgggccacttgtagcaggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctaCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAAtttt                                                                                                                                       <  7:47956‑M1/38‑1 (MQ=255)                        ggCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCa                                                                                                                           <  6:238563/149‑1 (MQ=255)                                 gcgcTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGctgctgag                                                                                                                  >  1:259992/1‑147 (MQ=255)                                 gcgcTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCg                                                                                                                  >  7:230846/1‑149 (MQ=255)                                  cgcTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCgg                                                                                                                 <  1:167863/149‑1 (MQ=255)                                  cgcTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCgg                                                                                                                 <  3:226859/149‑1 (MQ=255)                                   gcTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCggg                                                                                                                <  2:200617/149‑1 (MQ=255)                                                    gcgACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTaga                                                                                                                                                >  3:240053/1‑100 (MQ=255)                                                    gcgACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTaga                                                                                                                                                <  4:240053/100‑1 (MQ=255)                                                            cTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAg                                                                                                          <  7:212999/130‑1 (MQ=255)                                                            cTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAg                                                                                                          >  8:212999/1‑130 (MQ=255)                                                               ggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctaCGCGCCCAGCCTATCGGCCAGCGCGTaga                                                                                                                                                <  1:189363‑M1/29‑1 (MQ=255)                                                               ggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctaCGCGCCCAGCCTATCGGCCAGCGCGTaga                                                                                                                                                >  2:189363‑M1/61‑89 (MQ=255)                                                               aaCAGCCCGGCGCAGAGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCCGCCTATCGGCCAGCGCGTAGAGGAAATTTGCGACACTGTGCCGCTGCTGCGGGACCAAGGGCTCCACAACCGCTACCTGc                                                                                     >  3:166484/1‑148 (MQ=255)                                                                                   ccaccggccacGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACAccc                                                                <  2:259992/149‑1 (MQ=255)                                                                                    caccggccacGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGa                                                                                                                                    <  7:134929/80‑1 (MQ=255)                                                                                    caccggccacGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGa                                                                                                                                    >  8:134929/1‑80 (MQ=255)                                                                                     accggccacGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCAt                                                              <  8:223788/149‑1 (MQ=255)                                                                                          ccacGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCt                                                         >  3:151395/1‑149 (MQ=255)                                                                                                 tGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCtt                                                  >  5:175732/1‑149 (MQ=255)                                                                                                    gggTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTg                                               <  3:59824/149‑1 (MQ=255)                                                                                                          gctgctTCTGCCAAAGCCGCGCCCAGCCTATCGGCCATCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTgg                                                       <  8:241018/135‑1 (MQ=255)                                                                                                          gctgctTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTgg                                                       >  7:241018/1‑135 (MQ=255)                                                                                                              ctTCTGCGAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCa                                       <  4:151395/147‑1 (MQ=255)                                                                                                              aaaatttcctctacgcgctggccgataggctgggcgcgTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGc                                              <  7:47956‑M2/102‑1 (MQ=255)                                                                                                              aaaatttcctctacgcgctggccgataggctgggcgcgTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGc                                              >  8:47956‑M2/39‑140 (MQ=255)                                                                                                                 cTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCa                                  <  8:252634/149‑1 (MQ=255)                                                                                                                  tGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAaca                                                                     >  4:55919/1‑113 (MQ=255)                                                                                                                  tGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAaca                                                                     <  3:55919/113‑1 (MQ=255)                                                                                                                       tctacgcgctggccgataggctgggcgcgTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTAcc                                                                                        >  2:189363‑M2/30‑89 (MQ=255)                                                                                                                       tctacgcgctggccgataggctgggcgcgTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTAcc                                                                                        <  1:189363‑M2/60‑1 (MQ=255)                                                                                                                         tacgcgctggccgataggctgggcgcgTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGCCTgac                           >  3:32886‑M2/28‑148 (MQ=255)                                                                                                                             CGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGCCTGACGAccc                      >  3:137159‑M1/1‑149 (MQ=255)                                                                                                                              gctggccgataggctgggcgcgTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGCCTGACGACCCt                     >  4:15513‑M2/23‑149 (MQ=255)                                                                                                                               CCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGc                                <  6:206496‑M1/137‑1 (MQ=255)                                                                                                                               CCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGc                                >  5:206496‑M1/1‑137 (MQ=255)                                                                                                                                      tATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCACCTGCTGCGGGACCAAGGGCTCCACCACCGCTACATGCTACAAGTCGCCCAACACACCCATGTGCTGGAGCTTTTGCACGAGCATGTCAGCCTGACGACCCTGGCCGAg              >  7:152765/1‑148 (MQ=255)                                                                                                                                                 gcgTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGCCTGACGACCCTGGCCGAGCATGAGGCgctg  <  3:15513‑M2/146‑1 (MQ=255)                                                                                                                                                    tAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTc                                   <  1:268641/113‑1 (MQ=255)                                                                                                                                                    tAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTc                                   >  2:268641/1‑113 (MQ=255)                                                                                                                                                    |                                                                                                                                                  AGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCAGCCTGACGACCCTGGCCGAGCATGAGGCGCTG  >  NC_002947/5958458‑5958750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.