New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5958580 =	44 (1.040)	6 (0.150)	6/248	NT	14.2%	coding (1984/2856 nt)	cyaA	adenylate cyclase
	?	NC_002947	5958605 =	30 (0.740)					coding (2009/2856 nt)	cyaA	adenylate cyclase

CCAGGTCACCGTCAACAGCTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCA  >  NC_002947/5958432‑5958718                                                                                                                                                     |                                                                                                                                           ccAGGTCACCGTCAACAGCTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGcc                                                                                                                                            <  7:187534/149‑1 (MQ=255)   cagcgcctcatgctcggccagggtcgtcaggctgacatgctcgggcaaaagctccagcacatgggtgtgttgggccacttgtagcaggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctacgc                                                                                                                                          <  3:15513‑M1/3‑1 (MQ=255)          cGTAAACAGCTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTTCCAAAGCCGCTCCCAGc                                                                                                                                   <  4:226693/149‑1 (MQ=255)              aaCAGCTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCATCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAg                                                                                                                                    >  7:31227/1‑144 (MQ=255)              aaCAGCTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCATCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAg                                                                                                                                    <  8:31227/144‑1 (MQ=255)              aaCAGCTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTAt                                                                                                                               >  6:275736/1‑149 (MQ=255)              aaCAGCTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTAt                                                                                                                               >  4:226859/1‑149 (MQ=255)                   cTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGcc                                                                                                                          <  8:43278/149‑1 (MQ=255)                   cTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGc                                                                                                                           <  5:48199/148‑1 (MQ=255)                   cTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGc                                                                                                                           >  6:48199/1‑148 (MQ=255)                   cTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGc                                                                                                                           >  5:238563/1‑148 (MQ=255)                    tGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGc                                                                                                                           >  7:223788/1‑147 (MQ=255)                      agggtcgtcaggctgacatgctcgggcaaaagctccagcacatgggtgtgttgggccacttgtagcaggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctaCGCGCCCAGCCTATCGGCCAgc                                                                                                                       >  4:15513‑M1/128‑149 (MQ=255)                           aGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTa                                                                                                                  <  3:132209/149‑1 (MQ=255)                            gtcaggctgacatgctcgggcaaaagctccagcacatgggtgtgttgggccacttgtagcaggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctaCGCGCCCAGCCTATCGGCCAGCGCGTa                                                                                                                  >  3:32886‑M1/122‑148 (MQ=255)                                  ggTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGaaa                                                                                                           >  3:92129/1‑149 (MQ=255)                                   gTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGaa                                                                                                            <  2:210901/147‑1 (MQ=255)                                        gcgcTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCg                                                                                                     >  7:252634/1‑149 (MQ=255)                                            tATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGacac                                                                                                 >  1:136245/1‑149 (MQ=255)                                            tATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGacac                                                                                                 >  1:200617/1‑149 (MQ=255)                                              tGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCg                                                                                                                             <  2:78441/119‑1 (MQ=255)                                              tGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCg                                                                                                                             >  1:78441/1‑119 (MQ=255)                                              tGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACtg                                                                                               >  4:137159/1‑149 (MQ=255)                                              tGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACtg                                                                                               <  4:92129/149‑1 (MQ=255)                                               gcaaaagctccagcacatgggtgtgttgggccacttgtagcaggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctaCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAAtttt                                                                                                       <  7:47956‑M1/38‑1 (MQ=255)                                               gcaaaagctccagcacatgggtgtgttgggccacttgtagcaggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctaCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAAtttt                                                                                                       >  8:47956‑M1/103‑140 (MQ=255)                                                  ggCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCa                                                                                           <  6:238563/149‑1 (MQ=255)                                                           gcgcTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGctgctgag                                                                                  >  1:259992/1‑147 (MQ=255)                                                           gcgcTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCg                                                                                  >  7:230846/1‑149 (MQ=255)                                                            cgcTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCgg                                                                                 <  1:167863/149‑1 (MQ=255)                                                            cgcTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCgg                                                                                 <  3:226859/149‑1 (MQ=255)                                                             gcTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCggg                                                                                <  2:200617/149‑1 (MQ=255)                                                                              gcgACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTaga                                                                                                                <  4:240053/100‑1 (MQ=255)                                                                              gcgACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTaga                                                                                                                >  3:240053/1‑100 (MQ=255)                                                                                      cTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAg                                                                          >  8:212999/1‑130 (MQ=255)                                                                                      cTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAg                                                                          <  7:212999/130‑1 (MQ=255)                                                                                         ggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctaCGCGCCCAGCCTATCGGCCAGCGCGTaga                                                                                                                <  1:189363‑M1/29‑1 (MQ=255)                                                                                         ggtagcggtggtggagcccttggtcccgcagcagctgcacagtgtcgaaaatttcctctaCGCGCCCAGCCTATCGGCCAGCGCGTaga                                                                                                                >  2:189363‑M1/61‑89 (MQ=255)                                                                                         aaCAGCCCGGCGCAGAGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCCGCCTATCGGCCAGCGCGTAGAGGAAATTTGCGACACTGTGCCGCTGCTGCGGGACCAAGGGCTCCACAACCGCTACCTGc                                                     >  3:166484/1‑148 (MQ=255)                                                                                                             ccaccggccacGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACAccc                                <  2:259992/149‑1 (MQ=255)                                                                                                              caccggccacGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGa                                                                                                    >  8:134929/1‑80 (MQ=255)                                                                                                              caccggccacGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGa                                                                                                    <  7:134929/80‑1 (MQ=255)                                                                                                               accggccacGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCAt                              <  8:223788/149‑1 (MQ=255)                                                                                                                    ccacGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCt                         >  3:151395/1‑149 (MQ=255)                                                                                                                           tGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCtt                  >  5:175732/1‑149 (MQ=255)                                                                                                                              gggTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTg               <  3:59824/149‑1 (MQ=255)                                                                                                                                    gctgctTCTGCCAAAGCCGCGCCCAGCCTATCGGCCATCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTgg                       <  8:241018/135‑1 (MQ=255)                                                                                                                                    gctgctTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTgg                       >  7:241018/1‑135 (MQ=255)                                                                                                                                        ctTCTGCGAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCa       <  4:151395/147‑1 (MQ=255)                                                                                                                                           cTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCa  <  8:252634/149‑1 (MQ=255)                                                                                                                                            tGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAaca                                     <  3:55919/113‑1 (MQ=255)                                                                                                                                            tGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAaca                                     >  4:55919/1‑113 (MQ=255)                                                                                                                                                     |                                                                                                                                           CCAGGTCACCGTCAACAGCTGGAACGAGGTGCTGGTCCAGCGCTATGACGGCGAACACGCGCTGGTGCGCTGCCTGCGCGACTTCCTCAACAGCCCGGCGCAGCGCGGCCACCGGCCACGGGTGCGGGTACGCTGCTTCTGCCAAAGCCGCGCCCAGCCTATCGGCCAGCGCGTAGAGGAAATTTTCGACACTGTGCAGCTGCTGCGGGACCAAGGGCTCCACCACCGCTACCTGCTACAAGTGGCCCAACACACCCATGTGCTGGAGCTTTTGCCCGAGCATGTCA  >  NC_002947/5958432‑5958718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.