New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6040029	29 (0.690)	4 (0.100)	4/244	NT	11.4%	coding (34/780 nt)	PP_5292	catabolite repression control protein
	?	NC_002947	= 6040072	35 (0.880)					coding (77/780 nt)	PP_5292	catabolite repression control protein

TCGATGGCAAAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6039875‑6040029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcattcTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTGGTGTCC  <  NC_002947/6040072‑6039926                                                                                                                                                                                                                                                                                                                TCGATGGCAAAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATG                                                                                                                                                           <  4:49316/149‑1    ATGGCAAAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCA                                                                                                                                                        <  1:158877/149‑1       GCAAAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGG                                                                                                                                                          <  7:119394/144‑1       GCAAAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGG                                                                                                                                                          >  8:119394/1‑144                                                      ACACCACGGATTTAGCAAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAAT                                                                                                      <  2:210582/149‑1                                                             GGATTTACCTAAATGGGGTGAGCTCGGGTATCAGACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGGGAACGTAAAGGGCATTCTCGGCTTGCAGCCAGCTGAGCACACCACGCGCGGCCGCAGCCTGAATGCCATTT                                                                                               <  5:75270/149‑1                                                                                                                   GCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCC                                                                                                           <  7:66192/83‑1                                                                                                                   GCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCC                                                                                                           >  8:66192/1‑83                                                                                                                                                     GGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTG        <  1:79698/148‑1                                                                                                                                                     GGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCGCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTG        <  3:218131/148‑1                                                                                                                                                         TTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTGGTGTC   >  7:198790/1‑149                                                                                                                                                          TCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTGGTGTCC  >  4:95316/1‑149                                                                                                                                                                                                                                                                                                                TCGATGGCAAAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6039875‑6040029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcattcTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTGGTGTCC  <  NC_002947/6040072‑6039926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.