New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6040029	29 (0.690)	4 (0.100)	4/244	NT	11.4%	coding (34/780 nt)	PP_5292	catabolite repression control protein
	?	NC_002947	= 6040072	35 (0.880)					coding (77/780 nt)	PP_5292	catabolite repression control protein

CCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGTGCCTGCCCAAGGTGGTGTGGCCCTTTACTCGCGCATG  >  NC_002947/6039924‑6040217                                                                                                                                                     |                                                                                                                                                  ccGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCa                                                                                                                                                   >  4:130386/1‑149 (MQ=255)   ggACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAga                                                                                                                                                 >  4:95316‑M2/1‑147 (MQ=255)    gACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAgaa                                                                                                                                                >  7:198790‑M2/1‑146 (MQ=255)         cacGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGCGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAgaatgcc                                                                                                                                            <  3:218131‑M2/148‑8 (MQ=255)         cacGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAgaatgcc                                                                                                                                            <  1:79698‑M2/148‑8 (MQ=255)                  aGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATc                                                                                                                                   <  8:244845/148‑1 (MQ=255)                   gCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTg                                                                                                                                 <  2:73512/149‑1 (MQ=255)                           ggTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAgg                                                                                                                         <  1:136754/149‑1 (MQ=255)                               gAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATa                                                                                                                      <  6:54732/148‑1 (MQ=255)                                        tagcttACCCGCACGAGATTTATGGGGCCA‑TTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCg                                                                                                           <  5:109028/144‑1 (MQ=255)                                               cacgcacgAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCttt                                                                                                     <  3:130386/149‑1 (MQ=255)                                                  gcacgAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGaa                                                                                                  >  2:269219/1‑149 (MQ=255)                                                                 ggCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGATGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCt                                                                                   >  8:201183/1‑149 (MQ=255)                                                                                  atcaGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATg                                                                      <  2:58433/145‑1 (MQ=255)                                                                                  atcaGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATg                                                                      >  1:58433/1‑145 (MQ=255)                                                                                         tgAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCt                                                            <  2:241803/148‑1 (MQ=255)                                                                                           aaCGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTa                                                         >  3:172304/1‑149 (MQ=255)                                                                                              gTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGc                                                      <  7:201183/149‑1 (MQ=255)                                                                                              gTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGc                                                      >  7:144287/1‑149 (MQ=255)                                                                                                aaaTGGCATTCAGGCTGCGGCCGCGCGTGGTGTGCTCAGCTGGCTGCAAGCCGAgaatgccctttacgttcccactgatgatccgcataaatggccccataaatctcgtgcgtgtctgatacccgagctcaccccatttaggtaaatcc                                                    <  5:75270‑M2/149‑96 (MQ=255)                                                                                                  aTGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGc                                                                    >  3:53465/1‑131 (MQ=255)                                                                                                  aTGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGc                                                                    <  4:53465/131‑1 (MQ=255)                                                                                                       aTTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAgaatgccatttacgttcacactgatgatccgcataaatggccccataaatctcgtgcgtgtatgatacccgagctcaacccattttgctaaatccgtggtgt                                             <  2:210582‑M2/149‑103 (MQ=255)                                                                                                            ggCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAgaatgccatttacgttcacactgatgatccgcataaatggc                                                                                                          <  7:66192‑M2/83‑42 (MQ=255)                                                                                                            ggCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAgaatgccatttacgttcacactgatgatccgcataaatggc                                                                                                          >  8:66192‑M2/1‑42 (MQ=255)                                                                                                                cgaatctaGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGtgc                                     <  3:59249/141‑1 (MQ=255)                                                                                                                 cGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCg                                                                                                           >  4:146026/1‑77 (MQ=255)                                                                                                                   gCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCttt                                                          <  5:226009/124‑1 (MQ=255)                                                                                                                   gCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCttt                                                          >  6:226009/1‑124 (MQ=255)                                                                                                                    ccGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGtgcctgcc                                >  3:95003/1‑149 (MQ=255)                                                                                                                         cGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCt                                                                                                                                  >  8:162285/1‑46 (MQ=255)                                                                                                                         cGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCt                                                                                                                                  <  7:162285/46‑1 (MQ=255)                                                                                                                         cGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGAccc                                                                                       >  5:16145/1‑89 (MQ=255)                                                                                                                         cGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGAccc                                                                                       <  6:16145/89‑1 (MQ=255)                                                                                                                         cGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGTGCCTGCCCAAgg                           >  1:123386/1‑149 (MQ=255)                                                                                                                             gTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGTGCCTGCCCAAggtggt                       <  4:218131/149‑1 (MQ=255)                                                                                                                              tttGCTCAGCGGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGTGCCTGCCCAAGgtggtg                      <  1:269219/149‑1 (MQ=255)                                                                                                                                   tCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAg                                         <  6:142436/125‑1 (MQ=255)                                                                                                                                   tCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAg                                         >  5:142436/1‑125 (MQ=255)                                                                                                                                     aGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGTGCCTGCCCAAGGTGGTGTGGcc                 <  2:79698/147‑1 (MQ=255)                                                                                                                                          gctgCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGTGCCTGCCCAAGGTGGTGTGGCCCTTTAc           <  4:59253/148‑1 (MQ=255)                                                                                                                                          gccgCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGTGCCTGCCCAAGGTGGTGTGGCCCTTTa            <  4:52263/144‑1 (MQ=255)                                                                                                                                              cAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGTGCCTGCCCAAGGTGGTGTGGCCCTTTa            >  2:155831/1‑143 (MQ=255)                                                                                                                                              cAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGTGCCTGCCCAAGGTGGTGTGGCCCTTTa            <  1:155831/143‑1 (MQ=255)                                                                                                                                                  cccATAATGCCGACGTCATCAGCCTTCACGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTATCCAGCTCGATGGCAATTTCCTTTATGCCTGCGACGCGGAGGTGCCAGCCCAACGAGGTGTGGCCCTATACTCGCCCATg  >  4:79876/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGGAGGTGCCTGCCCAAGGTGGTGTGGCCCTTTACTCGCGCATG  >  NC_002947/6039924‑6040217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.