| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6040029 | 29 (0.690) | 4 (0.100) | 4/244 | NT | 11.4% | coding (34/780 nt) | PP_5292 | catabolite repression control protein |
| ? | NC_002947 | = 6040072 | 35 (0.880) | coding (77/780 nt) | PP_5292 | catabolite repression control protein | |||||
AAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGG > NC_002947/6039884‑6040176 | aaaCGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAgg > 4:42018/1‑149 (MQ=255) tACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGc < 1:136517/149‑1 (MQ=255) cGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCt < 6:69929/148‑1 (MQ=255) cATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAgctgg > 2:136754/1‑149 (MQ=255) aTGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTT‑TGCGGATAATAAATGTTAAAGTAAATTGCATTAAGGCATCGGCCGGCCCGGGTTTTCTAAgctgg > 6:109028/1‑147 (MQ=255) tGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAgctggct > 1:241803/1‑149 (MQ=255) gAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAgctggctg > 8:198790/1‑149 (MQ=255) aaTAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCTCGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAgctggctg > 3:59253/1‑148 (MQ=255) gTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGc < 3:42018/149‑1 (MQ=255) ccGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCa > 4:130386/1‑149 (MQ=255) ggACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAga > 4:95316‑M2/1‑147 (MQ=255) gACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAgaa > 7:198790‑M2/1‑146 (MQ=255) acacCACGGATTTAGCAAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCtgggcttgcagccagctgagcaaaccacgctcggccgcagcctgaat < 2:210582‑M1/149‑48 (MQ=255) cacGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGCGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAgaatgcc < 3:218131‑M2/148‑8 (MQ=255) cacGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAgaatgcc < 1:79698‑M2/148‑8 (MQ=255) ggATTTACCTAAATGGGGTGAGCTCGGGTATCAGACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGGGAACGTAAAGGGCATTCtcggcttgcagccagctgagcacaccacgcgcggccgcagcctgaatgccattt < 5:75270‑M1/149‑55 (MQ=255) acttAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCt < 2:78585/116‑1 (MQ=255) acttAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCt > 1:78585/3‑118 (MQ=255) aGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATc < 8:244845/148‑1 (MQ=255) gCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTg < 2:73512/149‑1 (MQ=255) tAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAgct < 7:150235/116‑1 (MQ=255) tAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAgct > 8:150235/1‑116 (MQ=255) ggTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAgg < 1:136754/149‑1 (MQ=255) gAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATa < 6:54732/148‑1 (MQ=255) tagcttACCCGCACGAGATTTATGGGGCCA‑TTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCg < 5:109028/144‑1 (MQ=255) cacgcacgAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCttt < 3:130386/149‑1 (MQ=255) gcacgAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGaa > 2:269219/1‑149 (MQ=255) ggCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGATGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCt > 8:201183/1‑149 (MQ=255) gCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCtgggcttgcagccagctgagcaaaccacgctcggccgcagcc > 8:66192‑M1/1‑41 (MQ=255) gCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCtgggcttgcagccagctgagcaaaccacgctcggccgcagcc < 7:66192‑M1/83‑43 (MQ=255) atcaGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATg > 1:58433/1‑145 (MQ=255) atcaGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATg < 2:58433/145‑1 (MQ=255) tgAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCt < 2:241803/148‑1 (MQ=255) aaCGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTa > 3:172304/1‑149 (MQ=255) gTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGc > 7:144287/1‑149 (MQ=255) gTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGc < 7:201183/149‑1 (MQ=255) aaaTGGCATTCAGGCTGCGGCCGCGCGTGGTGTGCTCAGCTGGCTGCAAGCCGAgaatgccctttacgttcccactgatgatccgcataaatggccccataaatctcgtgcgtgtctgatacccgagctcaccccatttaggtaaatcc < 5:75270‑M2/149‑96 (MQ=255) aTGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGc > 3:53465/1‑131 (MQ=255) aTGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGc < 4:53465/131‑1 (MQ=255) ggCATTCtgggcttgcagccagctgagcaaaccacgctcggccgcagcctgaatgccatttacgttcacactgatgatccgcataaatggccccataaatctcgtgcgtgtatgatacccgagctcaacccatttagctaaatccgtg < 1:79698‑M1/148‑142 (MQ=255) ggCATTCtgggcttgcagccagctgagcaaaccacgcgcggccgcagcctgaatgccatttacgttcacactgatgatccgcataaatggccccataaatctcgtgcgtgtatgatacccgagctcaacccatttagctaaatccgtg < 3:218131‑M1/148‑142 (MQ=255) aTTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAgaatgccatttacgttcacactgatgatccgcataaatggccccataaatctcgtgcgtgtatgatacccgagctcaacccattttgctaaatccgtggtgt < 2:210582‑M2/149‑103 (MQ=255) ttCtgggcttgcagccagctgagcaaaccacgctcggccgcagcctgaatgccatttacgttcacactgatgatccgcataaatggccccataaatctcgtgcgtgtatgatacccgagctcaacccatttagctaaatccgtggtgtc > 7:198790‑M1/1‑3 (MQ=255) tCtgggcttgcagccagctgagcaaaccacgctcggccgcagcctgaatgccatttacgttcacactgatgatccgcataaatggccccataaatctcgtgcgtgtatgatacccgagctcaacccatttagctaaatccgtggtgtcc > 4:95316‑M1/1‑2 (MQ=255) | AAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCAGGCTGCGGCCGAGCGTGGTTTGCTCAGCTGGCTGCAAGCCCAGAATGCCGACGTCATCTGCCTTCAGGATACCCGCGCCTCGGCCTTTGAACTCGACGACCCAGCTTTCCAGCTCGATGGCTATTTCCTTTATGCCTGCGACGCGG > NC_002947/6039884‑6040176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |