New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6112131	44 (1.040)	3 (0.080)	3/238	NT	6.8%	intergenic (+127/+86)	PP_5362/PP_5363	hypothetical protein/hypothetical protein
	?	NC_002947	= 6112186	42 (1.080)					intergenic (+182/+31)	PP_5362/PP_5363	hypothetical protein/hypothetical protein

CTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6112037‑6112131 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgcgtcgTGGGCATGCAGGCTCGGATAGTTCCACGTGGAACATTTCATTTCGATCCTTGCCTCGACGCGGTTACGGCATAGCTTTTCGGTCTGACAAAGGGTTGGTCAAGGCTGGTGTTTTCAGCGCGTGCTCGAAGCTGACTTACAAAATAGG  <  NC_002947/6112186‑6112040                                                                                                                                                                                                                                                    CTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGTGGGCATGCAGGCTCGGATAGTTCCACGTGGAACATTTCATTTCGATCCTTGC                                                                                                <  8:121060/148‑1      TATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGTGGGCATGCAGGCTCGGATAGTTCCACGTGGAACATTTCATTTCGATCCTTGCCTCGAC                                                                                          >  6:34404/1‑149          TTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGTGGGCATGCAGGCTCGGATAGTTCCACGTGGAACATTTCATTTCGATCCTTGCCTCGACGCG                                                                                       <  5:34404/148‑1                                                                                      AACCGCGTCGTGGGCATGCAGGCTCGGATAGTTCCACGTGGAACATTTCATTTCGATCCTTGCCTCGACGCGGTTACGGCATAGCTTTTCGGTCTGACAAAGGGTTGGTCAAGGCTGGTGTTTTCAGCGCGTGCTCGAAGCTGACTTA           >  3:78584/1‑148                                                                                            GTCGTGGGCATGCAGGCTCGGATAGTTCCACGTGGAACATTTCATTTCGATCCTTGCCTCGACGCGGTTACGGCATAGCTTTTCGGTCTGACAAAGGGTTGGTCAAGGCTGGTGTTTTCAGCGCGTGCTCGAAGCT                 >  7:153343/1‑136                                                                                            GTCGTGGGCATGCAGGCTCGGATAGTTCCACGTGGAACATTTCATTTCGATCCTTGCCTCGACGCGGTTACGGCATAGCTTTTCGGTCTGACAAAGGGTTGGTCAAGGCTGGTGTTTTCAGCGCGTGCTCGAAGCT                 <  8:153343/136‑1                                                                                               GTGGGCATGCAGGCTCGGATAGTTCCACGTGGAACATTTCATTTCGATCCTTGCCTCGACGCGGTTACGGCATAGCTTTTCGGTCTGACAAAGGGTTGGTCAAGGCTGGTGTTTTCAGCGCGTGCTCGAAGCTGACTTACAAAATAGG  >  4:195105/1‑148                                                                                                                                                                                                                                                    CTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6112037‑6112131 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgcgtcgTGGGCATGCAGGCTCGGATAGTTCCACGTGGAACATTTCATTTCGATCCTTGCCTCGACGCGGTTACGGCATAGCTTTTCGGTCTGACAAAGGGTTGGTCAAGGCTGGTGTTTTCAGCGCGTGCTCGAAGCTGACTTACAAAATAGG  <  NC_002947/6112186‑6112040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.