| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6112131 | 44 (1.040) | 3 (0.080) | 3/238 | NT | 6.8% | intergenic (+127/+86) | PP_5362/PP_5363 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 6112186 | 42 (1.080) | intergenic (+182/+31) | PP_5362/PP_5363 | hypothetical protein/hypothetical protein | |||||
GAGGGGTGCCGTTGACGCCTCCTTTCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGC > NC_002947/6111990‑6112278 | gAGGGGTGCCGTTGACGCCTCCTTTCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCaa < 7:200015/148‑1 (MQ=255) aGGGGTGCCGTTGACGCCTCCTTTCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAg > 8:103732/1‑148 (MQ=255) tGCCGTTGACGCCTCCTTTCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCg > 1:83207/1‑148 (MQ=255) ccGTTGACGCCTCCTTTCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAAGACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGGAAGGATCgaa < 8:25416/148‑1 (MQ=255) taCGCCTCCTTTCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCgaaatgaaa < 7:232081/148‑1 (MQ=255) gACGCCTCCTTTCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCgaaatgaa < 7:103732/148‑1 (MQ=255) aCGCCTCCTTTCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCgaaatgaaat < 7:142480/149‑1 (MQ=255) cGCCTCCTTTCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCgaaatgaaa > 8:232081/1‑147 (MQ=255) tCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTc < 4:41120/143‑1 (MQ=255) tCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTc > 3:41120/1‑143 (MQ=255) ttGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAAc > 5:80448/1‑148 (MQ=255) aCGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGCCCGAAAAGCTATGCCGTAACCGCGGCGAGGCAAGGATCGCAATGAAATGTTCCACGTGGAACTATcg > 8:241078/1‑148 (MQ=255) ttCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGc > 3:179106/1‑146 (MQ=255) ttCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGc < 4:179106/146‑1 (MQ=255) tctGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTg > 8:140752/1‑130 (MQ=255) tctGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTg < 7:140752/130‑1 (MQ=255) ctgcCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGtgggcatgcaggctcggatagttccacgtggaacatttcatttcgatccttgc < 8:121060‑M1/148‑54 (MQ=255) ccTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCgaaatgaaa < 5:144530/112‑1 (MQ=255) ccTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCgaaatgaaa > 6:144530/1‑112 (MQ=255) ccTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGc > 2:20802/1‑140 (MQ=255) ccTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGc < 1:20802/140‑1 (MQ=255) ccTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAc > 4:195105‑M2/1‑147 (MQ=255) tATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGtgggcatgcaggctcggatagttccacgtggaacatttcatttcgatccttgcctcgac > 6:34404‑M1/1‑90 (MQ=255) ttGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGtgggcatgcaggctcggatagttccacgtggaacatttcatttcgatccttgcctcgacgcg < 5:34404‑M1/148‑63 (MQ=255) tAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAcgacgcggtt > 3:78584‑M2/1‑138 (MQ=255) aaGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTACATGCCCACGACGCGGTTGc > 8:8463/1‑149 (MQ=255) aGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAACAGCTATGCCGTAACCGCGTCGAGGCAAGCATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTCCATGCCCACGACGCGGTTGcacct > 7:118785/1‑144 (MQ=255) aGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAcgac < 8:153343‑M2/136‑5 (MQ=255) aGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAcgac > 7:153343‑M2/1‑132 (MQ=255) aGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCcact > 2:74915/1‑148 (MQ=255) aCGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATggg > 5:238791/1‑148 (MQ=255) acCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTgcgc > 1:245909/1‑149 (MQ=255) aGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGt > 4:86182/1‑149 (MQ=255) cTTGACCAACACTTTGTCATACAGAAAATCTATGCCGTAACCGCGTCTATGCAATGATCGAAATGAAATGTTCCACGTGGAACTATCCTAGCCTACATCCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTg < 1:203345/149‑1 (MQ=255) gACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCAGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGAc < 2:83207/148‑1 (MQ=255) cAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGTTCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGt > 8:154134/1‑140 (MQ=255) cAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGTTCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGt < 7:154134/140‑1 (MQ=255) aCCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCa < 4:120413/67‑1 (MQ=255) aCCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCa > 3:120413/1‑67 (MQ=255) aCCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGcccc < 1:74915/149‑1 (MQ=255) cTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCg > 4:244927/1‑147 (MQ=255) tttGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAg > 5:33579/1‑149 (MQ=255) aGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTg < 3:244927/149‑1 (MQ=255) aGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTACATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCAtt < 7:8463/148‑1 (MQ=255) gACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGc < 2:245909/149‑1 (MQ=255) cGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCt > 5:111293/1‑148 (MQ=255) cGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCt > 3:220132/1‑148 (MQ=255) aaaaGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAAc < 6:80448/149‑1 (MQ=255) aaaGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCt < 2:249078/114‑1 (MQ=255) aaaGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCt > 1:249078/1‑114 (MQ=255) tGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACAcc < 3:86182/147‑1 (MQ=255) aaCCGCGTCGtgggcatgcaggctcggatagttccacgtggaacatttcatttcgatccttgcctcgacgcggttacggcatagcttttcggtctgacaaagggttggtcaaggctggtgttttcagcgcgtgctcgaagctgactta > 3:78584‑M1/1‑10 (MQ=255) cgcgTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAcgacgcggttacggcatagcttttcggtctgacaaagggttggtcaaggctggtgttttcagcgcgtgctcgaagctgacttacaa < 5:34404‑M2/148‑87 (MQ=255) gtcgtgggcatgcaggctcggatagttccacgtggaacatttcatttcgatccttgcctcgacgcggttacggcatagcttttcggtctgacaaagggttggtcaaggctggtgttttcagcgcgtgctcgaagct > 7:153343‑M1/1‑4 (MQ=255) gtcgtgggcatgcaggctcggatagttccacgtggaacatttcatttcgatccttgcctcgacgcggttacggcatagcttttcggtctgacaaagggttggtcaaggctggtgttttcagcgcgtgctcgaagct < 8:153343‑M1/136‑133 (MQ=255) gTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAcgacgcggttacggcatagcttttcggtctgacaaagggttggtcaaggctggtgttttcagcgcgtgctcgaagctgacttacaaaata > 6:34404‑M2/1‑59 (MQ=255) gtgggcatgcaggctcggatagttccacgtggaacatttcatttcgatccttgcctcgacgcggttacggcatagcttttcggtctgacaaagggttggtcaaggctggtgttttcagcgcgtgctcgaagctgacttacaaaatagg > 4:195105‑M1/1‑1 (MQ=255) | GAGGGGTGCCGTTGACGCCTCCTTTCATTTTGAACGTTTTTTCTCTGCTGCCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGC > NC_002947/6111990‑6112278 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |