New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6112131	44 (1.040)	3 (0.080)	3/238	NT	6.8%	intergenic (+127/+86)	PP_5362/PP_5363	hypothetical protein/hypothetical protein
	?	NC_002947	= 6112186	42 (1.080)					intergenic (+182/+31)	PP_5362/PP_5363	hypothetical protein/hypothetical protein

CCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGTTGAACGTGCCACTGACCTGGGTGGTGAAT  >  NC_002947/6112040‑6112334                                                                                                                                                   |                                                                                                                                                     ccTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAc                                                                                                                                                     >  4:195105‑M2/1‑147 (MQ=255)          tAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAcgacgcggtt                                                                                                                                            >  3:78584‑M2/1‑138 (MQ=255)           aaGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTACATGCCCACGACGCGGTTGc                                                                                                                                          >  8:8463/1‑149 (MQ=255)                aGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAACAGCTATGCCGTAACCGCGTCGAGGCAAGCATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTCCATGCCCACGACGCGGTTGcacct                                                                                                                                      >  7:118785/1‑144 (MQ=255)                aGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAcgac                                                                                                                                                  <  8:153343‑M2/136‑5 (MQ=255)                aGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAcgac                                                                                                                                                  >  7:153343‑M2/1‑132 (MQ=255)                aGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCcact                                                                                                                                      >  2:74915/1‑148 (MQ=255)                          aCGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATggg                                                                                                                            >  5:238791/1‑148 (MQ=255)                                       acCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTgcgc                                                                                                              >  1:245909/1‑149 (MQ=255)                                          aGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGt                                                                                                           >  4:86182/1‑149 (MQ=255)                                             cTTGACCAACACTTTGTCATACAGAAAATCTATGCCGTAACCGCGTCTATGCAATGATCGAAATGAAATGTTCCACGTGGAACTATCCTAGCCTACATCCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTg                                                                                                        <  1:203345/149‑1 (MQ=255)                                                gACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCAGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGAc                                                                                                      <  2:83207/148‑1 (MQ=255)                                                   cAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGTTCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGt                                                                                                           <  7:154134/140‑1 (MQ=255)                                                   cAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGTTCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGt                                                                                                           >  8:154134/1‑140 (MQ=255)                                                     aCCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGcccc                                                                                                <  1:74915/149‑1 (MQ=255)                                                        cTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCg                                                                                               >  4:244927/1‑147 (MQ=255)                                                         tttGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAg                                                                                            >  5:33579/1‑149 (MQ=255)                                                               aGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTg                                                                                      <  3:244927/149‑1 (MQ=255)                                                               aGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTACATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCAtt                                                                                       <  7:8463/148‑1 (MQ=255)                                                                gACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGc                                                                                     <  2:245909/149‑1 (MQ=255)                                                                   cGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCt                                                                                   >  3:220132/1‑148 (MQ=255)                                                                   cGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCt                                                                                   >  5:111293/1‑148 (MQ=255)                                                                     aaaaGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAAc                                                                                <  6:80448/149‑1 (MQ=255)                                                                      aaaGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCt                                                                                                                  <  2:249078/114‑1 (MQ=255)                                                                      aaaGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCt                                                                                                                  >  1:249078/1‑114 (MQ=255)                                                                             tGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACAcc                                                                          <  3:86182/147‑1 (MQ=255)                                                                                      cgcgTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAcgacgcggttacggcatagcttttcggtctgacaaagggttggtcaaggctggtgttttcagcgcgtgctcgaagctgacttacaa                                                                <  5:34404‑M2/148‑87 (MQ=255)                                                                                         gTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAcgacgcggttacggcatagcttttcggtctgacaaagggttggtcaaggctggtgttttcagcgcgtgctcgaagctgacttacaaaata                                                            >  6:34404‑M2/1‑59 (MQ=255)                                                                                               gCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCAcgacgcggttacggcatagcttttcggtctgacaaagggttggtcaaggctggtgttttcagcgcgtgctcgaagctgacttacaaaataggcag                                                       <  8:121060‑M2/148‑96 (MQ=255)                                                                                               gCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGcc                                                      >  5:120062/1‑149 (MQ=255)                                                                                                 aaGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCtt                                                    >  6:159551/1‑149 (MQ=255)                                                                                                 aaGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCtt                                                    <  6:238791/149‑1 (MQ=255)                                                                                                         aaatgaaatgTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTtgctgctgc                                            >  6:224464/1‑149 (MQ=255)                                                                                                         aaatgaaatgTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTtgctgctg                                             >  1:71690/1‑148 (MQ=255)                                                                                                         aaatgaaatgTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCACGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTtgctgctg                                             >  7:112151/1‑148 (MQ=255)                                                                                                          aatgaaatgTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTtgctgctg                                             >  5:56948/1‑147 (MQ=255)                                                                                                          aatgaaatgTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTtgctgctg                                             <  6:56948/147‑1 (MQ=255)                                                                                                               aatgTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACAccc                                      >  6:124426/1‑149 (MQ=255)                                                                                                               aatgTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTACCTAACCACACCGCACGCGTGTTCCTGCTGCCTTGCTGCTGCACAccg                                      >  8:247773/1‑148 (MQ=255)                                                                                                               aatgTTCCACGTGGAACTATCCGAGCCTGCATGCACACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACAccc                                      >  2:109009/1‑149 (MQ=255)                                                                                                                   ttCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAg                                  >  4:19177/1‑149 (MQ=255)                                                                                                                     ccACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGc                                 >  3:38123/1‑148 (MQ=255)                                                                                                                     ccACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGc                                 <  4:38123/148‑1 (MQ=255)                                                                                                                     ccACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCg                                >  7:44602/1‑149 (MQ=255)                                                                                                                      cACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGt                               <  5:159551/149‑1 (MQ=255)                                                                                                                       aCGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGtt                              >  1:141968/1‑149 (MQ=255)                                                                                                                        cGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGtt                              >  6:198615/1‑148 (MQ=255)                                                                                                                            gAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGTTGAAc                          <  6:120062/148‑1 (MQ=255)                                                                                                                                        ccTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGTTGAACGTGCCACTGACCt             <  5:124426/149‑1 (MQ=255)                                                                                                                                            cATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGGTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGTTGAACGTGCCACTGACCTgg           <  8:118785/147‑1 (MQ=255)                                                                                                                                             aTGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGTTGAACGTGCCACTGACCTGggtg        <  5:198615/149‑1 (MQ=255)                                                                                                                                               gaccACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCAGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGGTGCTGCACACCCGAAGCGTTGAACGTGCCACTGACCTGggttgt      <  6:154798/147‑1 (MQ=255)                                                                                                                                                cccACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGTTGAACGTGCCACTGACCTGggtggt      <  3:19177/148‑1 (MQ=255)                                                                                                                                                 ccACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGTTGAACGTGCCACTGACCTGGgtggtg     >  3:254352/1‑148 (MQ=255)                                                                                                                                                 ccACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGTTGAACGTGCCACTGACCTGGgtggtg     >  1:167777/1‑148 (MQ=255)                                                                                                                                                   acgacgCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGTTGAACGTGCCACTGACCTGGGTGGTGAAt  <  7:241078/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CCTATTTTGTAAGTCAGCTTCGAGCACGCGCTGAAAACACCAGCCTTGACCAACCCTTTGTCAGACCGAAAAGCTATGCCGTAACCGCGTCGAGGCAAGGATCGAAATGAAATGTTCCACGTGGAACTATCCGAGCCTGCATGCCCACGACGCGGTTGCCACTCACTAATGGGAATTTCAGCTGCGCGGTTTGACCGCCCCGCAGTCATTGCCTAACCACACCGCACGCGTGTTCATGCTGCCTTGCTGCTGCACACCCGAAGCGTTGAACGTGCCACTGACCTGGGTGGTGAAT  >  NC_002947/6112040‑6112334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.