New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6172767 =	45 (1.070)	4 (0.100)	4/236	NT	7.3%	coding (315/777 nt)	PP_5410	DeoR family transcriptional regulator
	?	NC_002947	6172834 =	61 (1.580)					coding (248/777 nt)	PP_5410	DeoR family transcriptional regulator

CGCCGCTACGGTGGTGCTGTGCCGGTACCGCAAGAGTTGCTCGGTGAACCGGCACAACCCGTCTCTTCCTATAAAAAGGCCATTGCGCGTGCCGCCGTGGGGCGTATCCGCGAACATGCGCGCATTATCATCGACAGCGGCAGCACCACGGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6172922‑6172767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacggcggcaCGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGCACCACCGTAGCGGCGTAACAACAAGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAG  >  NC_002947/6172834‑6172980                                                                                                                                                                                                                                                                                                                 CGCCGCTACGGTGGTGCTGTGCCGGTACCGCAAGAGTTGCTCGGTGAACCGGCACAACCCGTCTCTTCCTATAAAAAGGCCATTGCGCGTGCCGCCGTGGGGCGTATCCGCGAACATGCGCGCATTATCATCGACAGCGGCAGCACCA                                                                                                                                                             <  7:43552/148‑1      CTACGGTGGTGCTGTGCCGGTACCGCAAGAGTTGCTCGGTGAACCGGCACAACCCGTCTCTTCCTATAAAAAGGCCATTGCGCGTGCCGCCGTGGGGCGTATCCGCGAACATGCGCGCATTATCATCGACAGCGGCAGCACCACGGCGG                                                                                                                                                       <  5:171213/149‑1      CTACGGTGGTGCTGTGCCGGTACCGCAAGAGTTGCTCGGTGAACCGGCACAACCCGTCTCTTCCTATAAAAAGGAAATTGCGCGTGCCAAAGTGGGGCGTATCCGCGAACATGCGCGCATTATCATCGACAGCGGCAGCACCACGGCGG                                                                                                                                                       >  1:83453/1‑149        ACGGTGGTGCTGTGCCGGTACCGCAAGAGTTGCTCGGTGAACCGGCACAACCCGTCTCTTCCTATAAAAAGGCCATTGCGCGTGCCGCCGTGGGGCGTATCCGCGAACATGCGCGCATTATCATCGACAGCGGCAGCAC                                                                                                                                                               <  7:130226/139‑1        ACGGTGGTGCTGTGCCGGTACCGCAAGAGTTGCTCGGTGAACCGGCACAACCCGTCTCTTCCTATAAAAAGGCCATTGCGCGTGCCGCCGTGGGGCGTATCCGCGAACATGCGCGCATTATCATCGACAGCGGCAGCAC                                                                                                                                                               >  8:130226/1‑139                                                                                              GCCGTGGGGCGTATCCGCGAACATGCGCGCATTATCATCGACAGCGGCAGCACCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGCACCACCGTAGCG                                                               >  5:114539/1‑149                                                                                                CGTGGGGCGTATCCGCGAACATGCGCGCATTATCATCGACAGCGGCAGCACCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGCACCACCGTAGCGG                                                              >  6:204211/1‑148                                                                                                                GAACATGCGCGCATTATCATCGACAGCGGCAGCACCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGCACCACCGTAGCGGCATAACAACAAGCCGTT                                             <  5:204211/149‑1                                                                                                                         CGCATTATCATCGACAGCGGCAGCACCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGCACCACCGTAGCGGCGTAACAACAAGCCGTTGGTTTCCAA                                    <  6:114539/149‑1                                                                                                                                                  CCACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGCACCACCGTAGCGGCGTAACAACAAGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGT            >  4:253692/1‑148                                                                                                                                                   CACGGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGCACCACCGTAGCGGCGTAACAACAAGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCA          >  6:130973/1‑149                                                                                                                                                      GGCGGCACGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGCACCACCGTAGCGGCGTAACAACAAGCCGTTTGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTT       <  2:99726/149‑1                                                                                                                                                           aACGCGCATTGTCATTTTTATAGTAAGAGACGGGTTGTGCCGTTTAACCTTTCAAATATTGCGTTACCGGAACTGCACCACCGTAGCGGCGTAACAACAAGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAG  <  8:219672/148‑1                                                                                                                                                                                                                                                                                                                 CGCCGCTACGGTGGTGCTGTGCCGGTACCGCAAGAGTTGCTCGGTGAACCGGCACAACCCGTCTCTTCCTATAAAAAGGCCATTGCGCGTGCCGCCGTGGGGCGTATCCGCGAACATGCGCGCATTATCATCGACAGCGGCAGCACCACGGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6172922‑6172767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacggcggcaCGCGCAATGGCCTTTTTATAGGAAGAGACGGGTTGTGCCGGTTCACCGAGCAACTCTTGCGGTACCGGCACAGCACCACCGTAGCGGCGTAACAACAAGCCGTTGGTTTCCAAGGCGGCGAGGTCTTTGCGAATGGTCACTTCCGAG  >  NC_002947/6172834‑6172980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.